Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alces_20americanus_20[genbank_20GCA_5F900089705.1_202017-06-20] 5,099 sequences; 74,234,735 total letters Query= NC_024216.1 Length=160541 Score E Sequences producing significant alignments: (Bits) Value seq4630 102 8e-17 >seq4630 Length=6049 Score = 102 bits (112), Expect = 8e-17 Identities = 252/381 (66%), Gaps = 1/381 (0%) Strand=Plus/Minus Query 7404 GCTTTAAAATTGTATAAAGGTTTGATGATATCTTTGATATCGATTGTATCTTTCGTGTTC 7463 |||||||||||||| | ||||| || || || | || || | || || | Sbjct 4200 GCTTTAAAATTGTAAACCGGTTTCATAATTTCAATAATTTCTACAGTTTCGCCAATAACG 4141 Query 7464 TCGATAATTTCATCCATAGGTTTGTACACCATAGGAGCTTCATCTAATGTGCTCTCAACA 7523 || ||||| ||||| | | |||||| | || | |||||| | || | ||| Sbjct 4140 TCAATAATATCATCAAGCGTTTTGTAGGCTTGCGGCGATTCATCAAGCGTATTTTCATTT 4081 Query 7524 ACAGAAGTTGTCCAAACGCCAGCCATTGTATTTGTAAATTCTTCGATGTCTAGTGAATCC 7583 || |||||||| ||| || ||||||| ||| ||| ||||| | | |||||| Sbjct 4080 ACCGAAGTTGTATAAATCCCCGCCATTGAGTTTTGAAAATCTTCAAGCGAAATTGAATCT 4021 Query 7584 TTAGCTTTTCTACGGCTCATAATACGTCCTGCTCCATGAGGTGCAGAAAAGTTCCAATCA 7643 || || | | || ||| ||||| ||||| || || || || ||| | ||||| ||| Sbjct 4020 TTGGCAGTGCCGCGTGACATTATACGCCCTGCGCCGTGCGGAGCCGAATAATTCCATTCA 3961 Query 7644 GGATTACCTTTACCAAACGCAATGATAGAACCATCTCGCATGTTGATAGGGATAATTACT 7703 | ||| |||||||| | ||| | | || || || ||||| || || || || | ||| Sbjct 3960 GCATTTCCTTTACCTACCGCCAAAACCGAGCCGTCACGCATATTTATTGGAATTAAAACT 3901 Query 7704 CGTTCTCCTTGTTGAGCTGAGATAGCACCTTTACGCATAATCATATTGTCCATATCGATA 7763 ||| || || || | ||||| || || |||| |||||| | || | || || Sbjct 3900 TTTTCGCCCGCGTGCGCCGCAATAGCTCCCTTGCGCAGAATCATTTCTTCAACGTCAATG 3841 Query 7764 TAGTTGTGGATAGTATCGAAA 7784 || |||||||| |||| |||| Sbjct 3840 TAATTGTGGATTGTAT-GAAA 3821 Score = 91.5 bits (100), Expect = 2e-13 Identities = 91/118 (77%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 8354 CATCCCGCATCCGATATCGACTCCTACTAGATTTGAAACGATTTTATCTTGAATTGTCAT 8413 ||| ||||| || ||||| || ||||| | ||||| ||| |||||||||||| ||||| Sbjct 3232 CATTCCGCAGCCAATATCTACGCCTACAACATTTGGTACGGCTTTATCTTGAATCGTCAT 3173 Query 8414 TGTTGTACCTATTGTACATCCTGCACCTGCATGCGTGTCAGGCATAATACGAATCTTA 8471 ||||||||| ||||| || || | || || || ||||||||| || | ||| ||| Sbjct 3172 TGTTGTACCGATTGTGCAACCCGTGCCCGCGTGTACGTCAGGCATTATCCTAATTTTA 3115 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 513570464216040