Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alces_20americanus_20[genbank_20GCA_5F900089705.1_202017-06-20] 5,099 sequences; 74,234,735 total letters Query= NC_025414.1 Length=178171 Score E Sequences producing significant alignments: (Bits) Value seq2964 132 5e-26 seq2619 84.2 2e-11 seq1618 82.4 9e-11 >seq2964 Length=2227 Score = 132 bits (146), Expect = 5e-26 Identities = 569/883 (64%), Gaps = 40/883 (5%) Strand=Plus/Minus Query 154149 GCCCGTGCATACATTGAGTATCGCCACGATCGCGATATTGCCCGTGAACAGAAAAGCAAA 154208 |||||||| || || ||||| ||||| || | || | |||||| ||||| || Sbjct 1966 GCCCGTGCCTATATCGAGTACCGCCATGAAAGAGACCGTCTGCGTGAAAAGAAAGGCGCT 1907 Query 154209 CTGTTTACGGATATCTCCAGTATGGTGAATCTGTCCAATAAAGAGATCACCAACGAGAAC 154268 ||| ||| ||| | || | ||| ||| ||| ||| | |||||||| Sbjct 1906 CTGAGCCAGGAGATCAAGGGACTGATCGATCAGTCAAATGCAGATCTGCTTAACGAGAAT 1847 Query 154269 GCGAACAAAGAC-GCAAGGGTTTTCCCGACACAGCGCGATCTGTTGGCGGGTATCGTAGC 154327 || ||||| ||| |||||| | |||| ||| ||||| || || | || ||||| || || Sbjct 1846 GCCAACAAGGACAGCAAGGTTATTCC-GACCCAGCGTGACCTTCTTGCAGGTATTGTTGC 1788 Query 154328 GAAACACTTCGCACGTAACCACATTCTACCAAAACACATCGTAGAAGCGCATGATTCTGG 154387 |||| ||| | ||||| || || | | | || ||| ||||| || Sbjct 1787 ACGCCACTATGCAAAACAGCACATGCTTCCTCAGGAAGTTGTGAGAGCCCATGAAAGAGG 1728 Query 154388 TGATATCCATTATCATGATCTGGATTACAGCCCGTTCACGCC-ATACACAAACTGCTGTC 154446 || ||||||| ||| ||||| || || |||||| || || ||| ||| | Sbjct 1727 GGAGATCCATTTTCACGATCTCGACTATTCACCGTTCTTCCCGATGTTCAA-CTGTATGC 1669 Query 154447 TGGTGGATTTGAAAGGTATGCTGGCTAATGGCTTCAAGATGGGTAACGCAGACATCGAAC 154506 || | ||| | || ||||||| || |||||||||||||| || || |||||| Sbjct 1668 TGATCGATGTCGGCGGAATGCTGGAACGCGGTTTCAAGATGGGTAATGCCGAAATCGAAT 1609 Query 154507 CCCCGAAATCAATCGGTGTTGCGACTGCTCTTATGGCACAGATCACCGCACAGATTGCTT 154566 | || || |||||| || || || || ||| |||||||||| ||| ||| |||| Sbjct 1608 CACCTAAGTCAATCAGTACCGCAACCGCGGTTACCGCACAGATCATCGCCCAGGTTGCCA 1549 Query 154567 CTCACCAGTACGGCGGGACAACCTTTGCAAACG--TTGATAAAGTGCTGGCTCCGTATGC 154624 || |||||||| |||||| | ||| || |||| | ||||| || ||||||| Sbjct 1548 GCCATATCTACGGCGGTACAACCAT--CAACCGCTGTGATGAGGTGCTTGCCCCGTATGT 1491 Query 154625 AGAAATGACAT--ATGAAAAGCATGTTAAGGATGCTAAAAAGTATAAAATTTCGTTGGAT 154682 | || | ||| ||| || ||| || | ||| | ||| | || Sbjct 1490 TACCAAGAGTTTCATG--AAGTATCAGAAGATGGCCGAGGAGTGGCACATTCC--TGATC 1435 Query 154683 CGTACA--TATGCGATGGAAAAGACTGAAAAAGATGTG-TTTGATGCTTTCCAATCGTAT 154739 || ||| | ||| | |||||||| || ||| | ||| || ||||| || | Sbjct 1434 CGGACAGCTTTGCCCGAGCCCGTACTGAAAAGGA-GTGCTATGACGCCTTCCAGTCTCTT 1376 Query 154740 GAATACGAAGTTAACACGCTGCATACTGCCAACGGACAAACACCTTTCGTTACTATTACT 154799 ||||| ||||| ||||| |||||||| ||||||| || || || ||||| ||| | | Sbjct 1375 GAATATGAAGTAAACACCCTGCATACCTCCAACGGTCAGACTCCGTTCGTAACTCTCGGT 1316 Query 154800 TTCGGTACTGGTAC-----GGGAATGTTTGAACGAATGATCCAGAAAGCGATTCTGAAAA 154854 |||||| || || |||| | ||| |||||||||| | |||||||| | Sbjct 1315 TTCGGTCTGGGAACATCCTGGGAGT-----CACGTCTGATCCAGAAGTCTATTCTGAAGA 1261 Query 154855 ACCGTATTCGTGGTCTGG---GTAAACAAGGTATTACCCCTGTGTTCCCTAAACTGGTCA 154911 || | ||| |||||| | | || || | || | || |||||||| |||| Sbjct 1260 ACAGAATTGCTGGTCTCGGCCGCAATCA---CAGAACTGCGGTTTTCCCTAAGCTGG--- 1207 Query 154912 TGTTT---ATGGAAAAAGGTGTAAACATGAATCCTGGGGATCGTAACTATGACATCAAAC 154968 ||||| || | | || | ||| || || |||| |||||| || ||||| Sbjct 1206 TGTTTGCCATCAAGGAGGGACTGAACCGTAAAGAGGGTGATCCTAACTACGATATCAAGA 1147 Query 154969 AATTGGCTCTGGAATGCGCTTCGAAACGTATGTACCCAGATAT 155011 | ||||||| |||||||| || || | ||||| || ||||| Sbjct 1146 AGCTGGCTCTTGAATGCGCCTCCAAGAGAATGTATCCGGATAT 1104 >seq2619 Length=11042 Score = 84.2 bits (92), Expect = 2e-11 Identities = 173/254 (68%), Gaps = 4/254 (2%) Strand=Plus/Minus Query 40091 GGATCATCGTTTCCGCATGGAACCCTGTTGATCTGGATAAAATGGCATTGCGTCCGTGTC 40150 ||||||||||||| || ||||| | | || | ||||| |||||||| ||| |||| Sbjct 2563 GGATCATCGTTTCAGCCTGGAATGCCGGAGAAATTGATAAGATGGCATTAGCTCCTTGTC 2504 Query 40151 ACTGTTTCTTCCAGTTCGTCGTAATCAACGGTAAACTGTCTCTACAGTGGTATCAGCGTT 40210 | | | |||||||| ||| | || ||| | ||| |||| ||||||||| Sbjct 2503 ATGCTCTTTTCCAGTTTTATGTAGTTAATAACAAATTATCTTGCCAGTTGTATCAGCGAA 2444 Query 40211 CGGTTGATGTC-TTCTTAGGGTTGCCGTTCAATATCGCCTCCTACGCTCTCCTGACGCAT 40269 ||||||| ||||| | ||| || |||||||| || || ||||| || || ||| Sbjct 2443 GCTGTGATGTCTTTCTTGGTGTT-CCTTTCAATATTGCTAGTTATGCTCTTCTTACTCAT 2385 Query 40270 ATTATCGCTGATATTTGCGGGTACGAAGTAGGTGATCTGGTTTGGACAGGTGGTGATGTC 40329 || || || | |||| || || |||||| | |||||||| || || ||||| Sbjct 2384 ATGATGGCGCAGCAGTGCGATCTTGATGTTGGTGATTTTGTTTGGACCGGCGGAGATGTT 2325 Query 40330 CA--TATCTACAAA 40341 || ||| | |||| Sbjct 2324 CACTTATATTCAAA 2311 >seq1618 Length=17866 Score = 82.4 bits (90), Expect = 9e-11 Identities = 114/160 (71%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 40097 TCGTTTCCGCATGGAACCCTGTTGATCTGGATAAAATGGCATTGCGTCCGTGTCACTGTT 40156 |||| | ||||||||||||| ||| | || | |||||||||| ||| ||||| || Sbjct 9388 TCGTCACAGCATGGAACCCTGCTGAGATAGAAGATATGGCATTGCCTCCCTGTCATTGCC 9329 Query 40157 TCTTCCAGTTCGTCGTAATCAACGGTAAACTGTCTCTACAGTGGTATCAGCGTTCGGTTG 40216 |||| |||||| || | | | |||| || || ||| || || ||||||| || Sbjct 9328 TCTTTCAGTTCAATGTGAGCGAAGGTAGTCTTTCCTGTCAGCTATACCAACGTTCGGCTG 9269 Query 40217 ATGTCTTCTTAGGGTTGCCGTTCAATATCGCCTCCTACGC 40256 || | || || || ||||||||||||| ||| ||||| Sbjct 9268 ATATTTTTTTGGGAGTGCCGTTCAATATAGCCAGTTACGC 9229 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 569982868401240