Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alces_20americanus_20[genbank_20GCA_5F900089705.1_202017-06-20] 5,099 sequences; 74,234,735 total letters Query= NC_025422.1 Length=155997 Score E Sequences producing significant alignments: (Bits) Value seq140 91.5 1e-13 seq1923 89.7 5e-13 >seq140 Length=204551 Score = 91.5 bits (100), Expect = 1e-13 Identities = 248/373 (66%), Gaps = 9/373 (2%) Strand=Plus/Plus Query 23055 TGGTAATTGATAAGCTCAAAGTCTTCGAAAGTAAAGTCATCAATAGTCTTTTGATTACCA 23114 || ||||| || || ||||| || ||| | ||||||||| |||| ||| ||| | Sbjct 130321 TGATAATTTATCAGTTCAAAATCCTCGTATTTAAAGTCATTAATATCCTTAACATTCGGA 130380 Query 23115 TTGATTTTAATTTTCGGGAAAGGATATAAAGGGGTTCTTGAAAGTTGTTCTTTTGCTCCA 23174 || ||||| ||| |||| || ||||| ||| || |||||||| ||||| | Sbjct 130381 TTTATTTTCATTGTCGGCAACGGATA---AGGAGTGTGCGAAAGTTGCTCTTTCACCTGC 130437 Query 23175 TCGACATGATTTACATACAAATGAGCATCAACAATTGTATGGACAAATTCACCAG-CTTT 23233 || | |||||| ||| | || | ||| | | |||||| ||||||||||| | || Sbjct 130438 TCAAAATGATTATGATAAATGTGCGTATCGCCCAGTGTATGCACAAATTCACCCGGCTCG 130497 Query 23234 TAGTCCAGTAATCTTT-GCAACCAT-ATGAGTCAAAAGAGAATAGAAAGCAATATTGTAT 23291 ||| | | || ||| || ||||| ||| || ||||| | ||| ||||||||||| | Sbjct 130498 TAGCC--GCAAACTTGCGCCACCATCATG-GTTAAAAGCGCATATGAAGCAATATTGAAC 130554 Query 23292 GGAATTCCGAGGGCAGTATCTCCAGAACGCTGCAAAAGATGGCAGTTGAGCTTACCTTTA 23351 || | || | |||| | | ||||| |||| ||| | | ||| || Sbjct 130555 GGCACACCCAAAAACATATCACAACTGCGCTGATAAAGCATACAGCTCAATTTATTGTTC 130614 Query 23352 GTCACTCCAAATTGAAATGTCATATGACAAGGAGGTAGCGCCATTTGATCAATTTCACCA 23411 | ||| ||| ||||| |||| ||||| ||||| | ||||| |||||| || Sbjct 130615 GCCACATAAAACTGAAACATCATGTGACACGGAGGCAAGTGCATTTCGGCAATTTTGCCC 130674 Query 23412 GGATTCCAAGCAG 23424 ||||||||||| Sbjct 130675 ACATTCCAAGCAG 130687 >seq1923 Length=163503 Score = 89.7 bits (98), Expect = 5e-13 Identities = 140/200 (70%), Gaps = 3/200 (2%) Strand=Plus/Plus Query 23661 TCGGCCCAAGAATTCCAGATACCGACTCCATTATCTTGAAGATATTTGATATTTGTATCA 23720 || ||||| ||||||||| | |||||||| ||||| |||||||| ||| |||||| Sbjct 156769 TCAGCCCATTCATTCCAGATTCTGACTCCATGTTCTTGCAGATATTTTGCATTAGTATCA 156828 Query 23721 CCAGAAATCATCCAAAGGAGTTCATGTAGAATCCCTTTGAACCATACTTTCTTTGATGTC 23780 ||| | | |||||| ||||| | || ||| ||| || | |||||||| ||| Sbjct 156829 CCATTCAAGAACCAAAGCAGTTCGTATATAATAGATTTTAAATGAAGTTTCTTTGTTGTG 156888 Query 23781 AAAAGAGGTAATGTATCATTCTCAAGATTGAAACGCATCTGGTAACCGAATTTTGAATAC 23840 | | ||| ||| | || ||||||||||| | ||| |||| ||||| ||| Sbjct 156889 AGCAAAGGGAATC---CTTTGTCAAGATTGAATCTCATTTGGTTTCCGAAGACAGAAATG 156945 Query 23841 GTCCCGGTTCCAGTTCTATC 23860 || || ||||| || ||||| Sbjct 156946 GTGCCCGTTCCGGTCCTATC 156965 Score = 86.0 bits (94), Expect = 6e-12 Identities = 222/336 (66%), Gaps = 2/336 (1%) Strand=Plus/Plus Query 23157 AGTTGTTCTTTTGCTCCATCGACATGATTTACATACAAATGAGCATCAACAATTGTATGG 23216 |||||| ||| ||| || | ||| |||| || || |||| ||| | | |||| Sbjct 156364 AGTTGTAATTTGGCTTGTTCCAGATGGTTTAGGTATAAGTGAGTGTCACCGGTGGTATAA 156423 Query 23217 ACAAATTCACCAGCTTTTAGTCCAGTAATCTTTGCAACCAT-ATGAGTCAAAAGAGAATA 23275 || || || |||| || || ||||| | || |||||||| || || ||| | || ||| Sbjct 156424 ACGAAATCTCCAGGTTCGAGGCCAGTTACCTGAGCAACCATCATAAG-CAATAAAGCATA 156482 Query 23276 GAAAGCAATATTGTATGGAATTCCGAGGGCAGTATCTCCAGAACGCTGCAAAAGATGGCA 23335 |||||||||| | |||| || || |||||| || | ||| | || || Sbjct 156483 AGAAGCAATATTAAAAGGAACGCCAAGAAACGTATCTGCACTTCTCTGATAGAGCTGAAG 156542 Query 23336 GTTGAGCTTACCTTTAGTCACTCCAAATTGAAATGTCATATGACAAGGAGGTAGCGCCAT 23395 | | | ||| || || | ||| |||||||| || || || || || || ||| Sbjct 156543 GCTCAACTTGCCGTTTGCCACATAGAATTGAAAAAGGATGTGGCATGGTGGGAGATTCAT 156602 Query 23396 TTGATCAATTTCACCAGGATTCCAAGCAGTCACAATATGTCTACGCGAATATGGATTGGT 23455 | |||||| ||| || ||||||||||| |||||| ||| | |||| ||||| | Sbjct 156603 ATTATCAATATCAGCAACATTCCAAGCAGACACAATCATTCTTCTAGAATCGGGATTATT 156662 Query 23456 CTTGATATCTTCAATTACTTTCGCGAGTTGATCAAT 23491 || || | || ||||||| || | ||||| || Sbjct 156663 TTTTATCTGGTCGATTACTTGTGCAATCTGATCTAT 156698 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499030591010280