Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alces_20americanus_20[genbank_20GCA_5F900089705.1_202017-06-20] 5,099 sequences; 74,234,735 total letters Query= NC_025449.1 Length=166783 Score E Sequences producing significant alignments: (Bits) Value seq2964 113 5e-20 seq2701 91.5 2e-13 >seq2964 Length=2227 Score = 113 bits (124), Expect = 5e-20 Identities = 508/792 (64%), Gaps = 15/792 (2%) Strand=Plus/Plus Query 41614 AATATCAGGATACATCCTTTTGCTTGCACACTCTAGAGCAAGCTGCTTAATATCATAGTT 41673 |||||| |||||||| || ||| || || || ||||| |||| ||| ||||| ||||| Sbjct 1103 AATATCCGGATACATTCTCTTGGAGGCGCATTCAAGAGCCAGCTTCTTGATATCGTAGTT 1162 Query 41674 CGGATCGTCTTTATAAAGATTAACGCCTTCTTCAACGAACATAACAAGTTTAGGAAAAAT 41733 ||||| | | | | | || | || || | | | | || || ||||| |||| Sbjct 1163 AGGATCACCCTCTTTACGGTTCAGTCCCTCCTTGATGGCAAACACCAGCTTAGGGAAAAC 1222 Query 41734 AGGAGTTATCCCATCACGACCAAGACCTTTAATACGATTTTTCAGAATTGCTTTCTGAAT 41793 | |||| | || || || ||||| ||| | || |||||||| | ||||| || Sbjct 1223 CGCAGTTCTGTGATTGCGGCCGAGACCAGCAATTCTGTTCTTCAGAATAGACTTCTGGAT 1282 Query 41794 CATTCGTTCAGTCCAGTCAGTTCCCGTACCAAATGTAATTGTTACAAAAGGAGTCTGTCC 41853 || ||| |||| |||||| ||| || | ||||| || |||||||| || Sbjct 1283 CAGACGTGACTCCCAGGATGTTCCCAGACCGAAACCGAGAGTTACGAACGGAGTCTGACC 1342 Query 41854 GTTTGAACTAAAGAGAGTATTTACTTCATATTCATAAGCTTGGAATGCATCGTATACGTC 41913 ||| || || || || ||||||||||||||| || ||||| || || || || Sbjct 1343 GTTGGAGGTATGCAGGGTGTTTACTTCATATTCAAGAGACTGGAAGGCGTCATAGCACTC 1402 Query 41914 TTTTTCTGTTTTAGATTGAGCATAATTCAACGCATCAGCGATTTGCCATTTTTCTG-CAT 41972 ||||| || | | | ||| | | || ||||| || ||||| | || | ||| Sbjct 1403 CTTTTCAGTACGGGCTCGGGCAAAGCTGTCCGGATCAGGAATGTGCCACTCCTCGGCCAT 1462 Query 41973 CCTC-AATATGTTTTGCATAGGTGCGTTTAACATAAGGAGAAAGTACTTTATCTACATTC 42031 | || ||| | || | | | ||||||| || | ||| || | ||| ||| Sbjct 1463 CTTCTGATACTTCATGAAACTCTTGG--TAACATACGGGGCAAGCACCTCATC-ACAGCG 1519 Query 42032 G-CAAAAGTCGTTCCGCCATATTGATGGGAAGCAACCTGTGCAGTAATTTGTGCCATAAT 42090 | | || || ||||| || |||| |||||||| || | || ||||| ||| Sbjct 1520 GTTGATGGTTGTACCGCCGTAGATATGGCTGGCAACCTGGGCGATGATCTGTGCGGTAAC 1579 Query 42091 TGCAGTAGCAACACCGATTGATTTAGGAGTTTCAATCTGTGCATTACCGAGCTTAAATCC 42150 || || || || |||||| ||||| | ||| || | |||||||| | ||| || || Sbjct 1580 CGCGGTTGCGGTACTGATTGACTTAGGTGATTCGATTTCGGCATTACCCATCTTGAAACC 1639 Query 42151 GTTCTCAAGCATTCCTTTTAAATCTACTAAACAGCAATTAGTAAAT--GGAAGAGCAGGG 42208 | || |||||||| | ||| | | | || | | | | || |||||| | || Sbjct 1640 GCGTTCCAGCATTCCGCCGACATCGA-TCAGCATACAGTTGAACATCGGGAAGAAC-GGT 1697 Query 42209 GAATAATCAATATCGTGCACGTGAATAATTCCGCTTTCATGCGCTTTCATAA-TAAAAGA 42267 ||||| || | |||||| | || || || |||||||| ||| ||| || | || Sbjct 1698 GAATAGTCGAGATCGTGAAAATGGATCTCCCCTCTTTCATGGGCTCTCACAACTTCCTGA 1757 Query 42268 CGGGACCAT---ATTTTTGGCAATGTGTTTAGACACAATACCAGCCATAAGGTCCCGTTG 42324 || | ||| | ||| ||| ||| | |||||||| || | |||||| || || Sbjct 1758 -GGAAGCATGTGCTGTTTTGCATAGTGGCGTGCAACAATACCTGCAAGAAGGTCACGCTG 1816 Query 42325 AGTTGGAAAAACACGAGAATCTTTATTAGCATTCTCGTTTAAAAGGTCTTTATTAGTTTT 42384 || |||| ||| || || || ||||||||||| | || ||| ||| | | Sbjct 1817 GGTCGGAATAACCTTGCTGTCCTTGTTGGCATTCTCGTTAAGCAGATCTGCATTTGACTG 1876 Query 42385 ATGAATCAATCC 42396 || |||| ||| Sbjct 1877 ATCGATCAGTCC 1888 >seq2701 Length=6067 Score = 91.5 bits (100), Expect = 2e-13 Identities = 112/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 60255 AACGTCGCGCTGCTGTTCCGGAGTCAGAGAGTTAAAGCGAACTGCATAACCGGATACACG 60314 ||| || |||||||||| || | |||||| || || || |||||||| || ||||| Sbjct 5336 AACATCCTGCTGCTGTTCTTTGGTTAAAGAGTTGAAACGTACAGCATAACCTGAAACACG 5277 Query 60315 GATGGTCAGCTGCGGATATTTTTCCGGATGCTTAACTGCATCTTCCAGAGTTTCACGACG 60374 ||| ||||| ||||||||||| || || | | |||||| ||| ||||| | Sbjct 5276 GATTGTCAGTGTAGGATATTTTTCAGGGTGTTCCATTGCATCGAGCAGTGTTTCTCTGTT 5217 Query 60375 CAGAACGTTAACGTTCAGGTGTTGACCACCTTC 60407 |||||||| || ||||| || ||||| ||||| Sbjct 5216 GAGAACGTTCACATTCAGATGCTGACCGCCTTC 5184 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 533543591097720