Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alces_20americanus_20[genbank_20GCA_5F900089705.1_202017-06-20] 5,099 sequences; 74,234,735 total letters Query= NC_025453.1 Length=40286 Score E Sequences producing significant alignments: (Bits) Value seq4544 132 1e-26 seq4575 87.8 5e-13 seq1820 86.0 2e-12 seq2153 82.4 2e-11 >seq4544 Length=66047 Score = 132 bits (146), Expect = 1e-26 Identities = 202/286 (71%), Gaps = 4/286 (1%) Strand=Plus/Minus Query 39609 ATAATCGTAACCTAAGGGAACAATGCCACTTCCGTGATAGTATCCTTGTTTTGCACGTTC 39668 ||||| ||| |||| |||| | || ||| |||| |||| |||||| || | Sbjct 53999 ATAATTGTAGCCTATAGGAATATAGCATGCTCCATGATGTAATCCAGATTTTGCTCGCGC 53940 Query 39669 TGTTCTTCCCATGTGCATTCTTTCTGTAATTGTGTCTCGCTCTAATTGTGCAAAAACGGA 39728 | || |||||||| | | | |||| | ||| || || || || || |||||||| | Sbjct 53939 TATTTTTCCCATGCGTGTACGTTCTCTGATTTGCTCACGTTCCAACTGGGCAAAAACAGC 53880 Query 39729 TAACATTCCTATCGTCGCACGGCCAAAAGGTGTTGATGTGTCAAAGCTTTCTTGCATGCT 39788 | || ||||||| |||| | |||||||||| ||| || ||||| ||||| ||||| | Sbjct 53879 AAGCAATCCTATCATCGCTCTTCCAAAAGGTGATGACGTATCAAAACTTTCCTGCAT--T 53822 Query 39789 GATA--AAGTCTACATTATTTTTTAGAAATACATCTTCAATTAAATACAATGTATTCTTT 39846 |||| || ||||| ||||| || ||||| |||||||| | ||| | ||||| Sbjct 53821 GATACAAAATCTACTTTATTAGGTAAAAATATTTCTTCAATAAGATAAAGTGTATCACGC 53762 Query 39847 TGTGAACGTGAAAGCCTGTCTAATTTGTAGACTAGAACCACATCAA 39892 || |||||||| | | ||| | || || || ||||||||||||| Sbjct 53761 TGAGAACGTGACAATCGGTCAAGCTTATAAACAAGAACCACATCAA 53716 >seq4575 Length=28649 Score = 87.8 bits (96), Expect = 5e-13 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 37008 AGGACCATTAGCTCAGTTGGTTAGAGCAAACGGCTCATAACCGTTCGGTCACAGGTTCGA 37067 |||||| ||||||||||||||||||||| ||||||||||||| |||||| |||||| | Sbjct 5962 AGGACCTATAGCTCAGTTGGTTAGAGCAACCGGCTCATAACCGGTCGGTCCTAGGTTCAA 5903 Query 37068 GTCCTGTATGGTCCAC 37083 ||||| ||||||| Sbjct 5902 GTCCTAGTGGGTCCAC 5887 >seq1820 Length=6076 Score = 86.0 bits (94), Expect = 2e-12 Identities = 61/70 (87%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 37016 TAGCTCAGTTGGTTAGAGCAAACGGCTCATAACCGTTCGGTCACAGGTTCGAGTCCTGTA 37075 ||||||||||||||||||||| ||||||||||||| |||||| ||||||||||| | Sbjct 1 TAGCTCAGTTGGTTAGAGCAACCGGCTCATAACCGGTCGGTCCAGGGTTCGAGTCCCTGA 60 Query 37076 TGGTCCACTT 37085 ||||||||| Sbjct 61 GGGTCCACTT 70 >seq2153 Length=8481 Score = 82.4 bits (90), Expect = 2e-11 Identities = 57/65 (88%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 37003 TTTTTAGGACCATTAGCTCAGTTGGTTAGAGCAAACGGCTCATAACCGTTCGGTCACAGG 37062 || || || ||||||||||||||||||||||||| ||||||||||||| |||||| || Sbjct 65 TTATTTGGGCCATTAGCTCAGTTGGTTAGAGCAACCGGCTCATAACCGGTCGGTCCGGGG 6 Query 37063 TTCGA 37067 ||||| Sbjct 5 TTCGA 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 128785801467024