Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alces_20americanus_20[genbank_20GCA_5F900089705.1_202017-06-20] 5,099 sequences; 74,234,735 total letters Query= NC_025829.1 Length=164999 Score E Sequences producing significant alignments: (Bits) Value seq2964 123 3e-23 seq2701 93.3 4e-14 >seq2964 Length=2227 Score = 123 bits (136), Expect = 3e-23 Identities = 510/791 (64%), Gaps = 15/791 (2%) Strand=Plus/Plus Query 46024 ATGTCAGGATACATTCTTTTGCTTGCACACTCTAGAGCAAGCTGCTTAATATCATAGTTC 46083 || || ||||||||||| ||| || || || ||||| |||| ||| ||||| ||||| Sbjct 1104 ATATCCGGATACATTCTCTTGGAGGCGCATTCAAGAGCCAGCTTCTTGATATCGTAGTTA 1163 Query 46084 GGATCATCTTTATAAAGATTAACACCCTCTTCAACGAACATAACAAGTTTAGGGAAAATA 46143 |||||| | | | | | || | ||||| | | | | || || |||||||||| Sbjct 1164 GGATCACCCTCTTTACGGTTCAGTCCCTCCTTGATGGCAAACACCAGCTTAGGGAAAACC 1223 Query 46144 GGAGTTATCCCATCGCGACCAAGACCCTTAATACGATTTTTCAGAATTGCTTTCTGAATC 46203 | |||| | || ||| || ||||| ||| | || |||||||| | ||||| ||| Sbjct 1224 GCAGTTCTGTGATTGCGGCCGAGACCAGCAATTCTGTTCTTCAGAATAGACTTCTGGATC 1283 Query 46204 ATTCGTTCAGTCCAGTCAGTTCCCGTACCAAATGTAATTGTTACAAAAGGCGTTTGTCCG 46263 | ||| |||| |||||| ||| || | ||||| || || || || ||| Sbjct 1284 AGACGTGACTCCCAGGATGTTCCCAGACCGAAACCGAGAGTTACGAACGGAGTCTGACCG 1343 Query 46264 TTTGAACTAAAAAGAGTATTTACTTCATATTCATAAGCTTGGAATGCATCGTATACGTCT 46323 || || || || || ||||||||||||||| || ||||| || || || || Sbjct 1344 TTGGAGGTATGCAGGGTGTTTACTTCATATTCAAGAGACTGGAAGGCGTCATAGCACTCC 1403 Query 46324 TTTTCTGTTTTAGATTGAGCATAATTCAACGCATCAGCGATTTGCCATTTTTCTG-CGTC 46382 ||||| || | | | ||| | | || ||||| || ||||| | || | | || Sbjct 1404 TTTTCAGTACGGGCTCGGGCAAAGCTGTCCGGATCAGGAATGTGCCACTCCTCGGCCATC 1463 Query 46383 CTC-AATATGTTTTGCATAGGTGCGTTTAACATAAGGAGAAAGTACTTTATCTACATTCG 46441 || ||| | || | | | ||||||| || | ||| || | ||| ||| | Sbjct 1464 TTCTGATACTTCATGAAACTCTTGG--TAACATACGGGGCAAGCACCTCATC-ACAGCGG 1520 Query 46442 -CAAAAGTTGTTCCGCCATATTGATGGGAAGCAACCTGCGCAGTAATTTGTGCCATAATT 46500 | ||||| ||||| || |||| |||||||| || | || ||||| ||| Sbjct 1521 TTGATGGTTGTACCGCCGTAGATATGGCTGGCAACCTGGGCGATGATCTGTGCGGTAACC 1580 Query 46501 GCAGTAGCAACGCCGATTGATTTAGGAGTTTCAATCTGTGCATTGCCGAGCTTAAATCCG 46560 || || || | |||||| ||||| | ||| || | ||||| || | ||| || ||| Sbjct 1581 GCGGTTGCGGTACTGATTGACTTAGGTGATTCGATTTCGGCATTACCCATCTTGAAACCG 1640 Query 46561 TTTTCAAGCATTCCTTTTAAATCTACTAAACAGCAATTAGTAAAT--GGAAGAGCAGGGG 46618 ||| |||||||| | ||| | | | || | | | | || |||||| | || | Sbjct 1641 CGTTCCAGCATTCCGCCGACATCGA-TCAGCATACAGTTGAACATCGGGAAGAAC-GGTG 1698 Query 46619 AATAATCAATATCATGGAAATGGATAATTCCGCTTTCATGCGCTTTCATAA-TAAAAGAC 46677 |||| || | ||| || |||||||| || |||||||| ||| ||| || | || Sbjct 1699 AATAGTCGAGATCGTGAAAATGGATCTCCCCTCTTTCATGGGCTCTCACAACTTCCTGA- 1757 Query 46678 GGGACCAT---ATTTTTGGCAATGTGTTTAGACACAATACCAGCCATAAGGTCCCGTTGA 46734 || | ||| | ||| ||| ||| | |||||||| || | |||||| || || Sbjct 1758 GGAAGCATGTGCTGTTTTGCATAGTGGCGTGCAACAATACCTGCAAGAAGGTCACGCTGG 1817 Query 46735 GTTGGAAAAACACGAGAATCTTTATTAGCATTCTCGTTCAAAAGGTCTTTATTAGTTTTA 46794 || |||| ||| || || || ||||||||||| | || ||| ||| | | | Sbjct 1818 GTCGGAATAACCTTGCTGTCCTTGTTGGCATTCTCGTTAAGCAGATCTGCATTTGACTGA 1877 Query 46795 TGAATCAATCC 46805 | |||| ||| Sbjct 1878 TCGATCAGTCC 1888 >seq2701 Length=6067 Score = 93.3 bits (102), Expect = 4e-14 Identities = 131/184 (71%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 65096 ATTACAAGCTCTCAGTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAG 65155 |||||| ||| ||| || || | | | ||| || |||||||||| || | || Sbjct 5367 ATTACAGCTTCTGAGTGAAAGTTCTTGTTACAACATCCTGCTGCTGTTCTTTGGTTAAAG 5308 Query 65156 AGTTAAAGCGAACTGCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGAT 65215 |||| || || || |||||||| || |||||||| ||||| ||||||||||| || | Sbjct 5307 AGTTGAAACGTACAGCATAACCTGAAACACGGATTGTCAGTGTAGGATATTTTTCAGGGT 5248 Query 65216 GCTTAACTGCATCTTCCAGAGTTTCACGACGCAGAACGTTAACGTTCAGGTGTTGACCAC 65275 | | | |||||| ||| ||||| | |||||||| || ||||| || ||||| | Sbjct 5247 GTTCCATTGCATCGAGCAGTGTTTCTCTGTTGAGAACGTTCACATTCAGATGCTGACCGC 5188 Query 65276 CTTC 65279 |||| Sbjct 5187 CTTC 5184 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 527835154962360