Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alces_20americanus_20[genbank_20GCA_5F900089705.1_202017-06-20] 5,099 sequences; 74,234,735 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq2451 174 2e-38 seq4293 154 2e-32 seq2324 147 3e-30 seq4688 125 8e-24 seq4988 116 4e-21 seq127 114 2e-20 seq3773 98.7 1e-15 seq758 96.9 4e-15 seq4012 95.1 1e-14 seq3719 95.1 1e-14 seq4091 91.5 2e-13 >seq2451 Length=31860 Score = 174 bits (192), Expect = 2e-38 Identities = 222/306 (73%), Gaps = 0/306 (0%) Strand=Plus/Plus Query 146882 TGGGGAAGGGTCGGGGGTTCCTGGCCAGCTGAATTTTCAGGGGCTCCACGTGGTTGAGGT 146941 |||||| ||| || || ||| || ||||| | || | || | |||||| || Sbjct 18222 TGGGGAGGGGACGCGGTGTCCGGGAAAGCTGCAGGGCCACCTGATCGAAGTGGTTCCTGT 18281 Query 146942 AGACGTGCGCGTCCCCCAGGGTGTGCACAAAGTCCCCCGGCTTAAGGCCGGTCACGTGGG 147001 | | ||||| || ||| |||||||| || || || |||| |||||||| || |||| Sbjct 18282 ACAGGTGCGTATCTCCCGTCGTGTGCACGAACTCTCCGGGCTGCAGGCCGGTGACCTGGG 18341 Query 147002 CCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAAGGGGACCCCCAGGCCCATGT 147061 ||| |||| || ||||||| |||| ||||||||||||||| || |||||| || || Sbjct 18342 CCATCATGAGCGTAAGCAGCGCGTAGGAGGCTATGTTGAAGGGAACGCCCAGGAACACGT 18401 Query 147062 CCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTCGGCCACGTAAAACTGGCACA 147121 | | | ||| ||||||||||| || || | ||| |||||||||| |||||| ||| Sbjct 18402 CGGCGCTGCGCTGATACAGCTGGCAGGACAGTTTTCCGCCGGCCACGTAGAACTGGAACA 18461 Query 147122 GGATGTGGCACGGCGGCAGCGCCATGGCGGGCAGGTCCGCGGGGTTCCAGGCCGAGACCA 147181 || |||||| || ||||| ||||| | || || || ||||||||||||| ||||| Sbjct 18462 GGCAGTGGCAGGGGGGCAGGGCCATCTGGTCCACCTCGGCCGGGTTCCAGGCCGTGACCA 18521 Query 147182 CCAGCC 147187 || || Sbjct 18522 ACATCC 18527 >seq4293 Length=67978 Score = 154 bits (170), Expect = 2e-32 Identities = 219/308 (71%), Gaps = 0/308 (0%) Strand=Plus/Plus Query 146932 TGGTTGAGGTAGACGTGCGCGTCCCCCAGGGTGTGCACAAAGTCCCCCGGCTTAAGGCCG 146991 ||||||||||||| ||| | ||| ||| |||||| | || || ||||| || ||| Sbjct 67213 TGGTTGAGGTAGATGTGGGTGTCGCCCGTGGTGTGGATGAATTCGCCCGGAGCCAGCCCG 67272 Query 146992 GTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAAGGGGACCCCC 147051 | | || || | ||| |||||||||||||||| ||| ||||||||||| || ||| Sbjct 67273 CACTCCTGTGCTATCATCATGGTGAGCAGCGAGTAGGAGGCGATGTTGAAGGGCACGCCC 67332 Query 147052 AGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTCGGCCACGTAA 147111 ||| ||||| | | |||||| |||||||| ||| ||||| ||||| || Sbjct 67333 AGGAAGGTGTCCGCGCTGCGCTGGTAGAGCTGGCAGCTGAGGCGGCCGTCCGCCACATAG 67392 Query 147112 AACTGGCACAGGATGTGGCACGGCGGCAGCGCCATGGCGGGCAGGTCCGCGGGGTTCCAG 147171 |||||| | ||| ||||||||| || |||||||| | || || |||||||||| Sbjct 67393 AACTGGAAGAGGCAGTGGCACGGGGGAAGCGCCATCATGTCCACCTCGCCGGGGTTCCAT 67452 Query 147172 GCCGAGACCACCAGCCGCCTGCTCTCGGGGTTCCTCTTAATCTCTTCGATAACCCACCTC 147231 || || || | || || | ||| || || || || || |||| ||||| || | || Sbjct 67453 GCGGATACGATGAGGCGGCGGCTGTCCGGATTGCTTTTTATCTGGTCGATGACATTCTTC 67512 Query 147232 AGCTGGTC 147239 |||||||| Sbjct 67513 AGCTGGTC 67520 >seq2324 Length=83463 Score = 147 bits (162), Expect = 3e-30 Identities = 225/321 (70%), Gaps = 0/321 (0%) Strand=Plus/Plus Query 146924 GCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGGTGTGCACAAAGTCCCCCGGCT 146983 |||||| |||||||||||||| ||| | ||| || |||||| | || || |||||| Sbjct 68165 GCTCCATGTGGTTGAGGTAGATGTGGGTGTCGCCTGTGGTGTGGATGAATTCGCCCGGCC 68224 Query 146984 TAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAAGG 147043 || ||| | || || | ||| ||| | |||||| || || |||||||| | Sbjct 68225 GGAGCCCGCATTCCTGCGCTATCATCATGGTTAACAGCGAATACGACGCGATGTTGAACG 68284 Query 147044 GGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTCGG 147103 | || || ||| |||| | | |||||| |||||||||||||| | ||| || | Sbjct 68285 GCACGCCGAGGAAAGTGTCGGCGCTGCGCTGGTAGAGCTGGCACGAGAGTTTCCCCTCCG 68344 Query 147104 CCACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCATGGCGGGCAGGTCCGCGG 147163 ||||||| |||||| ||||| |||||| || ||||||||||| || || | | Sbjct 68345 CCACGTAGAACTGGAACAGGCAGTGGCAGGGGGGCAGCGCCATCCTCTCCACTTCGCCAG 68404 Query 147164 GGTTCCAGGCCGAGACCACCAGCCGCCTGCTCTCGGGGTTCCTCTTAATCTCTTCGATAA 147223 |||||||||||| ||||| |||||| | ||||| ||||| |||| | || | Sbjct 68405 GGTTCCAGGCCGTGACCATCAGCCGGCGCGAGTCGGGAGAGCTCTTTATCTGCCCAATCA 68464 Query 147224 CCCACCTCAGCTGGTCCACGC 147244 || |||||||||| |||| Sbjct 68465 CCTGTTTCAGCTGGTCGACGC 68485 >seq4688 Length=13253 Score = 125 bits (138), Expect = 8e-24 Identities = 177/249 (71%), Gaps = 0/249 (0%) Strand=Plus/Minus Query 146931 GTGGTTGAGGTAGACGTGCGCGTCCCCCAGGGTGTGCACAAAGTCCCCCGGCTTAAGGCC 146990 |||||||||||||| ||| | ||| || | || ||| || || || || |||| ||||| Sbjct 3980 GTGGTTGAGGTAGATGTGGGTGTCGCCGAAGGAGTGGACGAACTCGCCGGGCTGCAGGCC 3921 Query 146991 GGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAAGGGGACCCC 147050 || || || || | ||| |||||| || | ||| ||| ||||||||||| || || Sbjct 3920 CGTGACCTGTGCGATCATCATGGTGAGGAGGGCATAGGAGGCGATGTTGAAGGGCACTCC 3861 Query 147051 CAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTCGGCCACGTA 147110 ||| | ||| | | |||||| |||||||| || |||||||| ||||| Sbjct 3860 GAGGAAGACGTCGGCGCTGCGCTGGTAGAGCTGGCAGCTCAGGCGGCCGTCGGCTACGTA 3801 Query 147111 AAACTGGCACAGGATGTGGCACGGCGGCAGCGCCATGGCGGGCAGGTCCGCGGGGTTCCA 147170 |||||| ||||| |||||| ||||| || ||||| | | ||| || |||||||| Sbjct 3800 GAACTGGAACAGGCAGTGGCAGGGCGGGAGGGCCATCTTGTCGATGTCGGCCGGGTTCCA 3741 Query 147171 GGCCGAGAC 147179 ||| |||| Sbjct 3740 GGCGCAGAC 3732 >seq4988 Length=203393 Score = 116 bits (128), Expect = 4e-21 Identities = 199/286 (70%), Gaps = 6/286 (2%) Strand=Plus/Plus Query 146908 AGCTGAATTTTCAGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGGTGTGC 146967 ||||||| ||| | | || | |||||| || |||| ||| || || |||| ||||| Sbjct 157293 AGCTGAAGTTTGACCTGGTCAAGGTGGTTCAGATAGATGTGGGCATCGCCCAAAGTGTGG 157352 Query 146968 ACAAAGTCCCCCGGCTTAAGGCCGGTCACGTGGGC---CACCATGTAGGTGAGCAGCGAG 147024 |||||| || |||| ||| || ||||| || || || |||| || | ||| | Sbjct 157353 ACAAAGGTACCGGGCTGAAGTCCCGTCACCTGAGCTGTCATCATG-AGC--AACAGGGCA 157409 Query 147025 TAGCTGGCTATGTTGAAGGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGG 147084 ||| || |||||||| || || ||||| ||||| |||| | ||| || ||||| Sbjct 157410 TAGGACGCAATGTTGAAAGGCACGCCCAGAAAGATGTCGGCCGAACGCTGATAAAGCTGA 157469 Query 147085 CACGAGAGCTCCCCGTCGGCCACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCC 147144 ||| || | || ||||| || || |||||| | | |||||||| ||||||| |||| Sbjct 157470 AGCGAAAGTTTGCCTTCGGCTACATAGAACTGGAAGAACATGTGGCAGGGCGGCAACGCC 157529 Query 147145 ATGGCGGGCAGGTCCGCGGGGTTCCAGGCCGAGACCACCAGCCGCC 147190 || |||| || || |||||||||||||| || | |||| Sbjct 157530 ATCTGCGGCACATCGGCCACATTCCAGGCCGAGACGACGATACGCC 157575 >seq127 Length=36082 Score = 114 bits (126), Expect = 2e-20 Identities = 160/222 (72%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 146926 TCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGGTGTGCACAAAGTCCCCCGGCTTA 146985 |||| |||||| ||||||| ||| | ||| || ||| || | || || ||||| || Sbjct 867 TCCAAGTGGTTCAGGTAGAGGTGTGTGTCGCCGGTGGTATGGATGAACTCACCCGGTTTC 926 Query 146986 AGGCCGGTCACGTGGGCCACCATGTAGGTG-AGCAGCGAGTAGCTGGCTATGTTGAAGGG 147044 || || ||||| || |||| |||| || | ||||| | || ||| ||||||||||| Sbjct 927 AGTCCCGTCACCTGAGCCATCATG-AGCAGCAGCAGGGCATACGAGGCAATGTTGAAGGG 985 Query 147045 GACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTCGGC 147104 || || ||| | || |||| | |||||| ||||| ||| || || |||| ||| Sbjct 986 AACGCCGAGGAAGGTATCGGCCGAACGCTGGTAGAGCTGCAGCGAAAGTTCACCGTTGGC 1045 Query 147105 CACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCAT 147146 || || |||||| ||| | | ||||| ||||| |||||||| Sbjct 1046 AACATAGAACTGGAACATGGTATGGCAGGGCGGAAGCGCCAT 1087 >seq3773 Length=40482 Score = 98.7 bits (108), Expect = 1e-15 Identities = 183/266 (69%), Gaps = 2/266 (1%) Strand=Plus/Minus Query 146924 GCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGGTGTGCACAAAGTCCCCCGGCT 146983 |||| | |||||||||||||| ||| | ||| || | || | || || || | | Sbjct 39123 GCTCGATGTGGTTGAGGTAGAGGTGAGTGTCGCCAGTAGAATGAATGAAATCGCCAGTTT 39064 Query 146984 TAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAAGG 147043 ||| | ||||| || |||| ||| | |||| | ||| ||||||||||| | Sbjct 39063 CGAGGTCTGTCACCTGCGCCATCATCTGCAGCAGCAAAGCGTACGATGCTATGTTGAAAG 39004 Query 147044 GGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTCGG 147103 | || || ||| |||| |||| | || || ||||| |||||| |||||| | Sbjct 39003 GCACGCCGAGGAAGGTGTCTGCCGAACGTTGATAGAGCTGTAGCGAGAGTCGCCCGTCAG 38944 Query 147104 CCACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCATGGCGGGC-AGGTCCGCG 147162 | ||||| ||||| ||||| |||||| |||||||| ||||| |||| | | || || Sbjct 38943 CGACGTAGAACTGAAACAGGCAGTGGCATGGCGGCAGTGCCAT-GCGGTCGACCTCGGCA 38885 Query 147163 GGGTTCCAGGCCGAGACCACCAGCCG 147188 |||||| |||||||| | || ||| Sbjct 38884 ACGTTCCATGCCGAGACGATCATCCG 38859 >seq758 Length=33601 Score = 96.9 bits (106), Expect = 4e-15 Identities = 148/209 (71%), Gaps = 4/209 (2%) Strand=Plus/Plus Query 146940 GTAGACGTGCGCGTCCCCCAGGGTGTGCACAAAGTCCCCCGGCTTAAGGCCGGTCACGT- 146998 ||| | ||||| ||| || ||||| || || || || |||| |||||| || || Sbjct 8524 GTAAATGTGCGTGTCTCCGGTTGTGTGAACGAATTCACCAGGCTCGAGGCCG--CAGGTT 8581 Query 146999 -GGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAAGGGGACCCCCAGGCCC 147057 | || | ||| |||||| |||| |||| || || ||||| || || |||||| | Sbjct 8582 TGCGCTATCATCATGGTGAGAAGCGCGTAGGACGCGATATTGAACGGAACACCCAGGAAC 8641 Query 147058 ATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTCGGCCACGTAAAACTGG 147117 | ||| | | |||||| |||||||| ||||| | ||||| ||||| || |||||| Sbjct 8642 ACGTCTGCGCTGCGCTGGTAGAGCTGGCAGGAGAGTTTCCCGTTTGCCACATAGAACTGG 8701 Query 147118 CACAGGATGTGGCACGGCGGCAGCGCCAT 147146 | || |||||| || ||||||||||| Sbjct 8702 AAAAGACAGTGGCAGGGAGGCAGCGCCAT 8730 >seq4012 Length=43821 Score = 95.1 bits (104), Expect = 1e-14 Identities = 151/217 (70%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 146924 GCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGGTGTGCACAAAGTCCCCCGGCT 146983 |||||| ||||| ||| || | || | || || |||| ||| || || || || | Sbjct 16399 GCTCCAGGTGGTCGAGATACAGATGAGTATCGCCAGTCGTGTACACGAAATCGCCTGGTT 16458 Query 146984 TAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAAGG 147043 | || || ||||| || |||||||| || ||||||| || ||||| || ||||| | Sbjct 16459 TCAGTCCAGTCACCTGAGCCACCATCATCGTCAGCAGCGCATAACTGGCGATATTGAAAG 16518 Query 147044 GGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTCGG 147103 | || || || | | || | ||||| ||||||||||| || | ||||| | Sbjct 16519 GCACGCCAAGAAACGTATCGGCACTTCTCTGATACAGCTGGCAACTCAGTTTTCCGTCAG 16578 Query 147104 CCACGTAAAACTGGCACAGGATGTGGCACGGCGGCAG 147140 |||| ||||||||| |||| || || || || ||||| Sbjct 16579 CCACATAAAACTGGAACAGAATATGACATGGAGGCAG 16615 >seq3719 Length=49728 Score = 95.1 bits (104), Expect = 1e-14 Identities = 163/237 (69%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 146908 AGCTGAATTTTCAGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGGTGTGC 146967 ||||| | |||| | || | ||||||| ||||| ||| |||| || | ||| || Sbjct 23602 AGCTGCAGCTTCACCTGTTCGATGTGGTTGTTGTAGATATGCACGTCGCCGAAGGTATGG 23661 Query 146968 ACAAAGTCCCCCGGCTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAG 147027 || || || || || | || || ||| || |||| ||| ||| |||||||| || Sbjct 23662 ACGAAATCACCGGGTTCGAGATCGCACACCTGAGCCATCATCATGGTCAGCAGCGAATAC 23721 Query 147028 CTGGCTATGTTGAAGGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCAC 147087 || |||||||| || || || || || ||| |||| | ||||| ||||||||| Sbjct 23722 GAAGCGATGTTGAACGGCACGCCGAGAAACACGTCGGCCGAGCGTTGGTAAAGCTGGCAC 23781 Query 147088 GAGAGCTCCCCGTCGGCCACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCC 147144 || |||| |||| ||||| || |||||| | | | || || || ||||| ||| Sbjct 23782 GACAGCTTGCCGTTTGCCACATAGAACTGGAAGAAGGCATGACAGGGAGGCAGTGCC 23838 >seq4091 Length=21372 Score = 91.5 bits (100), Expect = 2e-13 Identities = 205/308 (67%), Gaps = 0/308 (0%) Strand=Plus/Minus Query 146872 ATCTTGAGCTTGGGGAAGGGTCGGGGGTTCCTGGCCAGCTGAATTTTCAGGGGCTCCACG 146931 ||||| | | |||| | ||| || || | | || || ||| | ||| |||| | Sbjct 9539 ATCTTCATCGTGGGCAGGGGGCGCGGCTCACGGGTCAACTGGAGTTTGGCCTGCTCGATA 9480 Query 146932 TGGTTGAGGTAGACGTGCGCGTCCCCCAGGGTGTGCACAAAGTCCCCCGGCTTAAGGCCG 146991 ||||| || |||| || | ||| ||| |||||| | ||||| |||| ||| ||| Sbjct 9479 TGGTTCAGATAGAGATGGGTGTCGCCCGTGGTGTGGATGAAGTCGCCCGCCTTGTAGCCC 9420 Query 146992 GTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAAGGGGACCCCC 147051 ||||| || |||| ||| | | ||||| | || ||| |||||||| || || ||| Sbjct 9419 GTCACCTGTGCCATCATCTGGAGCAGCAGGGCATACGAGGCGATGTTGAATGGCACGCCC 9360 Query 147052 AGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTCGGCCACGTAA 147111 ||| | || |||| | |||||| || || ||| || || | ||||| || Sbjct 9359 AGGAAGGTATCAGCCGAGCGCTGGTAGAGTTGCAGCGACAGACGGTCGCCAGCCACATAG 9300 Query 147112 AACTGGCACAGGATGTGGCACGGCGGCAGCGCCATGGCGGGCAGGTCCGCGGGGTTCCAG 147171 |||||| | | | |||| || || |||| ||||| | || || || ||||||| Sbjct 9299 AACTGGAAGATGGTGTGACAGGGGGGCAAGGCCATCTTGTTCACCTCAGCCACGTTCCAG 9240 Query 147172 GCCGAGAC 147179 |||||||| Sbjct 9239 GCCGAGAC 9232 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583450809933600