Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alces_20americanus_20[genbank_20GCA_5F900089705.1_202017-06-20] 5,099 sequences; 74,234,735 total letters Query= NC_026928.1 Length=189418 Score E Sequences producing significant alignments: (Bits) Value seq152 89.7 6e-13 seq3952 87.8 2e-12 seq2216 84.2 3e-11 seq4987 82.4 9e-11 seq4296 82.4 9e-11 >seq152 Length=50040 Score = 89.7 bits (98), Expect = 6e-13 Identities = 70/81 (86%), Gaps = 2/81 (2%) Strand=Plus/Plus Query 17851 TGCGAGTGTGGCGGAATCGGTAGACGCACCAGACTTAAAATCTGTTGAGCATTATGCTCG 17910 |||| ||||||||||||||||||||| |||||||||||||||||| | |||| | || Sbjct 8429 TGCGCTTGTGGCGGAATCGGTAGACGCTGCAGACTTAAAATCTGTTGGGATTTAT-CCCG 8487 Query 17911 TGGGAGTTCAAGTCTC-CCTA 17930 || ||||||||||||| |||| Sbjct 8488 TGCGAGTTCAAGTCTCGCCTA 8508 >seq3952 Length=6226 Score = 87.8 bits (96), Expect = 2e-12 Identities = 71/85 (84%), Gaps = 2/85 (2%) Strand=Plus/Minus Query 154238 TTGGGGGTAATACCCC--ACATGACTCAGTAGCTCAGTTGGATAGAGCAACTGCCTTCTA 154295 ||| || ||||||| | ||||| |||||||||||| ||||||||||||| |||||||| Sbjct 777 TTGAGGTTAATACCTCTGACATGTGTCAGTAGCTCAGCTGGATAGAGCAACGGCCTTCTA 718 Query 154296 AGCAGTCGGTCGTTGGTTCGAGTCC 154320 ||| || ||||| ||||||| ||| Sbjct 717 AGCCGTGGGTCGGGGGTTCGAATCC 693 >seq2216 Length=5131 Score = 84.2 bits (92), Expect = 3e-11 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 154265 TAGCTCAGTTGGATAGAGCAACTGCCTTCTAAGCAGTCGGTCGTTGGTTCGAGTCC 154320 ||||||||||||||||||||||||||||||||||||| || || ||||||||||| Sbjct 4445 TAGCTCAGTTGGATAGAGCAACTGCCTTCTAAGCAGTAGGCCGGAGGTTCGAGTCC 4500 >seq4987 Length=240000 Score = 82.4 bits (90), Expect = 9e-11 Identities = 60/70 (86%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 154261 TCAGTAGCTCAGTTGGATAGAGCAACTGCCTTCTAAGCAGTCGGTCGTTGGTTCGAGTCC 154320 |||||||||||| ||||||||||||| ||||||||||| || |||| | ||||||| ||| Sbjct 27941 TCAGTAGCTCAGCTGGATAGAGCAACAGCCTTCTAAGCTGTGGGTCTTGGGTTCGAATCC 27882 Query 154321 AACCTGAGTC 154330 | |||| || Sbjct 27881 CAACTGAATC 27872 >seq4296 Length=63118 Score = 82.4 bits (90), Expect = 9e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 154261 TCAGTAGCTCAGTTGGATAGAGCAACTGCCTTCTAAGCAGTCGGTCGTTGGTTCGAGTCC 154320 || |||||||||| |||||||||||| ||||||||||| || |||| | ||||||||||| Sbjct 61083 TCCGTAGCTCAGTCGGATAGAGCAACAGCCTTCTAAGCTGTGGGTCCTGGGTTCGAGTCC 61142 Query 154321 AACCTGAGTCGCCAG 154335 | | || || |||| Sbjct 61143 CAGCGGAATCACCAG 61157 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 605970974463120