Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alces_20americanus_20[genbank_20GCA_5F900089705.1_202017-06-20] 5,099 sequences; 74,234,735 total letters Query= NC_027348.1 Length=73990 Score E Sequences producing significant alignments: (Bits) Value seq4688 141 4e-29 seq2451 102 4e-17 seq4293 96.9 2e-15 seq582 84.2 1e-11 >seq4688 Length=13253 Score = 141 bits (156), Expect = 4e-29 Identities = 282/409 (69%), Gaps = 18/409 (4%) Strand=Plus/Plus Query 21412 GACCGCACTGGCACAGGCACCAAGTCCGTATTCGGTGCCCAGATGGAATTCGATCTGCGT 21471 |||||||| ||| ||||||| || ||||||||| ||||||| |||||| |||| Sbjct 3402 GACCGCACCGGCGTAGGCACCCAGAGCGTATTCGGCTACCAGATGCGATTCGACCTGCAG 3461 Query 21472 GAGGGCTTCCCCCTGCTC----CAGAAGAAGACCACCCCCTTCACCACGATCTTCACCGA 21527 || || |||||||| ||| | || | | ||||| || | | ||| || ||| Sbjct 3462 GAAGGTTTCCCCCTCCTCACCACCAAAAAGGTCCACCTCCG----CTCCATCATCCACGA 3517 Query 21528 GCT-CTCGTGGATGATGCAGGGCCTGACCAATGTGAACTGGCTACAG--CAA-AAGGGCT 21583 ||| ||| ||| | || ||| ||||| | || || || ||| |||| || Sbjct 3518 GCTTCTC-TGGTTCATAGCCGGCGACACCAACATCTCCTACCTCCACGCCAACAAGGTCT 3576 Query 21584 GCCACATCTGGGACGAATGGGCTGGTCCTGATGGCGGCCTCGGCCCGATCTATGGTGCCC 21643 | ||||||||||||||||| | | | |||| |||||| || |||| || || Sbjct 3577 CC---ATCTGGGACGAATGGGCCGACGCCAACGGCGACCTCGGTCCCGTCTACGGCCACC 3633 Query 21644 AGTGGCGCAGCATCCAAGGCCCCGATGGAAAGAACATCGACCAGCTGGCCAAGGCACAAG 21703 ||||||||||| || | |||||| || | |||||||||||| | | | || | Sbjct 3634 AGTGGCGCAGCTGGCAGGCCCCCGACGGCCGCAGCATCGACCAGCTCCGCGAAGTACTCG 3693 Query 21704 AGCTGCTGCTGAACGACCCGGACAGCCGCCGCATCATCGTGAATGCCTGGAACGTGGCCG 21763 | || | | || |||| ||| |||||||||| |||| ||||||||| ||||| Sbjct 3694 ACCTCATTGAGCACAACCCCGACTCCCGCCGCATCCTCGTCTGCGCCTGGAACCCGGCCG 3753 Query 21764 AGCTCGACCAGATGGCCCTGACACCGTGCCA-TGCGATGTTCCAGTTCT 21811 | ||||| |||||||||| | || ||||| ||| |||||||||||| Sbjct 3754 ACATCGACAAGATGGCCCTCCCGCCCTGCCACTGCC-TGTTCCAGTTCT 3801 Score = 91.5 bits (100), Expect = 7e-14 Identities = 136/191 (71%), Gaps = 9/191 (5%) Strand=Plus/Plus Query 21948 CCTGAGCTGCAAACTCTATCAGCGCAGCGCTGACATGTTCCTGGGCGTGCCCTTCAACAT 22007 |||||||||| | ||||| ||||||||||| ||| | ||||| || |||||||||||||| Sbjct 3818 CCTGAGCTGCCAGCTCTACCAGCGCAGCGCCGACGTCTTCCTCGGAGTGCCCTTCAACAT 3877 Query 22008 CGCCAGCTACGCGCTGCTGACGCACCTCATGGC---GGCCACGGTCGGCATGCAGGCCGA 22064 |||| ||| || || || || | || || || |||| ||| ||||| ||| Sbjct 3878 CGCCTCCTATGCCCTCCTCACCATGATGATCGCACAGGTCACG---GGCCTGCAGCCCGG 3934 Query 22065 GAAGTTCATCTGGTCTGGCGGTGACTGCCACCTGTACTCGAACCACATGGACCAG---GC 22121 ||||| || || ||| ||| |||| | ||| |||||| | |||||| || Sbjct 3935 CGAGTTCGTCCACTCCTTCGGCGACACCCACATCTACCTCAACCACTTCGACCAGGTCGC 3994 Query 22122 CAAGCAGCTGA 22132 ||||||||| Sbjct 3995 AGAGCAGCTGA 4005 >seq2451 Length=31860 Score = 102 bits (112), Expect = 4e-17 Identities = 96/121 (79%), Gaps = 6/121 (5%) Strand=Plus/Minus Query 21954 CTGCAAACTCTATCAGCGCAGCGCTGACATGTTCCTGGGCGTGCCCTTCAACATCGCCAG 22013 |||| | || |||||||||||||| ||| ||||||||||||| ||||||||||| ||| Sbjct 18427 CTGCCAGCTGTATCAGCGCAGCGCCGACGTGTTCCTGGGCGTTCCCTTCAACATAGCCTC 18368 Query 22014 CTACGCGCTGCTGACGCACCTCATGGC---GGCCACGGTCGGCATGCAGGCCGAGAAGTT 22070 |||||||||||| |||| | | ||||| || ||| |||| ||||| ||| |||| Sbjct 18367 CTACGCGCTGCTTACGCTCATGATGGCCCAGGTCAC---CGGCCTGCAGCCCGGAGAGTT 18311 Query 22071 C 22071 | Sbjct 18310 C 18310 >seq4293 Length=67978 Score = 96.9 bits (106), Expect = 2e-15 Identities = 70/81 (86%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 21948 CCTGAGCTGCAAACTCTATCAGCGCAGCGCTGACATGTTCCTGGGCGTGCCCTTCAACAT 22007 ||| |||||| | ||||| ||||||||||| |||| ||||||||||||||||||||||| Sbjct 67374 CCTCAGCTGCCAGCTCTACCAGCGCAGCGCGGACACCTTCCTGGGCGTGCCCTTCAACAT 67315 Query 22008 CGCCAGCTACGCGCTGCTGAC 22028 |||| |||| ||||||| || Sbjct 67314 CGCCTCCTACTCGCTGCTCAC 67294 >seq582 Length=6698 Score = 84.2 bits (92), Expect = 1e-11 Identities = 63/73 (86%), Gaps = 1/73 (1%) Strand=Plus/Minus Query 21953 GCTGCAAACTCTATCAGCGCAGCGCTGACATGTTCCTGGGCGTGCCCTTCAACATCGCCA 22012 ||||||| |||||||||||||| || |||| ||| |||||||||| |||||||||||| Sbjct 6553 GCTGCAA-CTCTATCAGCGCAGTGCCGACACCTTCTTGGGCGTGCCTTTCAACATCGCCT 6495 Query 22013 GCTACGCGCTGCT 22025 ||| |||||||| Sbjct 6494 CCTATGCGCTGCT 6482 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 236628494030189