Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alces_20americanus_20[genbank_20GCA_5F900089705.1_202017-06-20] 5,099 sequences; 74,234,735 total letters Query= NC_027353.1 Length=167063 Score E Sequences producing significant alignments: (Bits) Value seq2964 116 4e-21 seq2701 93.3 5e-14 >seq2964 Length=2227 Score = 116 bits (128), Expect = 4e-21 Identities = 509/792 (64%), Gaps = 15/792 (2%) Strand=Plus/Plus Query 42181 AATATCAGGATACATCCTTTTGCTTGCACACTCTAGAGCAAGCTGCTTAATATCATAGTT 42240 |||||| |||||||| || ||| || || || ||||| |||| ||| ||||| ||||| Sbjct 1103 AATATCCGGATACATTCTCTTGGAGGCGCATTCAAGAGCCAGCTTCTTGATATCGTAGTT 1162 Query 42241 CGGATCGTCTTTGTAAAGATTAACACCTTCTTCAACGAACATAACAAGCTTAGGAAAAAT 42300 ||||| | | | | | || | || || | | | | || |||||||| |||| Sbjct 1163 AGGATCACCCTCTTTACGGTTCAGTCCCTCCTTGATGGCAAACACCAGCTTAGGGAAAAC 1222 Query 42301 AGGAGTTATCCCATCACGACCGAGACCTTTAATACGATTTTTCAGAATTGCTTTCTGAAT 42360 | |||| | || || |||||||| ||| | || |||||||| | ||||| || Sbjct 1223 CGCAGTTCTGTGATTGCGGCCGAGACCAGCAATTCTGTTCTTCAGAATAGACTTCTGGAT 1282 Query 42361 CATTCGTTCAGTCCAGTCAGTTCCTGTACCAAATGTAATTGTTACAAAAGGAGTTTGTCC 42420 || ||| |||| ||||| ||| || | ||||| || ||||| || || Sbjct 1283 CAGACGTGACTCCCAGGATGTTCCCAGACCGAAACCGAGAGTTACGAACGGAGTCTGACC 1342 Query 42421 GTTTGAACTAAAGAGAGTATTTACTTCATATTCATAAGCTTGGAATGCATCGTATACATC 42480 ||| || || || || ||||||||||||||| || ||||| || || || || Sbjct 1343 GTTGGAGGTATGCAGGGTGTTTACTTCATATTCAAGAGACTGGAAGGCGTCATAGCACTC 1402 Query 42481 TTTTTCTGTTTTAGATTGGGCATAATTCAACGCATCGGCGATTTGCCATTTTTCTG-CAT 42539 ||||| || | | ||||| | | || ||| | || ||||| | || | ||| Sbjct 1403 CTTTTCAGTACGGGCTCGGGCAAAGCTGTCCGGATCAGGAATGTGCCACTCCTCGGCCAT 1462 Query 42540 CCT-TAATATGTTTTGCATAGGTGCGTTTAACATAAGGAGAAAGTACTTTATCTACATTC 42598 | | | ||| | || | | | ||||||| || | ||| || | ||| ||| Sbjct 1463 CTTCTGATACTTCATGAAACTCTTGG--TAACATACGGGGCAAGCACCTCATC-ACAGCG 1519 Query 42599 G-CAAAAGTCGTTCCGCCGTATTGGTGAGAAGCAACCTGTGCAGTAATTTGTGCCATAAT 42657 | | || || |||||||| || |||||||| || | || ||||| ||| Sbjct 1520 GTTGATGGTTGTACCGCCGTAGATATGGCTGGCAACCTGGGCGATGATCTGTGCGGTAAC 1579 Query 42658 TGCAGTAGCAACACCGATTGATTTAGGAGTTTCAATCTGTGCATTACCTAGCTTAAATCC 42717 || || || || |||||| ||||| | ||| || | |||||||| | ||| || || Sbjct 1580 CGCGGTTGCGGTACTGATTGACTTAGGTGATTCGATTTCGGCATTACCCATCTTGAAACC 1639 Query 42718 ATTCTCAAGCATTCCTTTTAAATCTACTAAACAGCAATTAGTAAAT--GGAAGAGCAGGG 42775 || |||||||| | ||| | | | || | | | | || |||||| | || Sbjct 1640 GCGTTCCAGCATTCCGCCGACATCGA-TCAGCATACAGTTGAACATCGGGAAGAAC-GGT 1697 Query 42776 GAATAATCAATATCGTGGAAATGGATAATTCCGCTTTCATGCGCTTTCATAA-TAAAAGA 42834 ||||| || | |||||| |||||||| || |||||||| ||| ||| || | || Sbjct 1698 GAATAGTCGAGATCGTGAAAATGGATCTCCCCTCTTTCATGGGCTCTCACAACTTCCTGA 1757 Query 42835 CGGGACCAT---ATTTTTGGCAATGTGTTTAGACACAATACCAGCCATAAGGTCCCGTTG 42891 || | ||| | ||| ||| ||| | |||||||| || | |||||| || || Sbjct 1758 -GGAAGCATGTGCTGTTTTGCATAGTGGCGTGCAACAATACCTGCAAGAAGGTCACGCTG 1816 Query 42892 AGTTGGAAAAACACGAGAATCTTTATTAGCATTCTCGTTTAAAAGGTCTTTATTAGTTTT 42951 || |||| ||| || || || ||||||||||| | || ||| ||| | | Sbjct 1817 GGTCGGAATAACCTTGCTGTCCTTGTTGGCATTCTCGTTAAGCAGATCTGCATTTGACTG 1876 Query 42952 ATGAATCAATCC 42963 || |||| ||| Sbjct 1877 ATCGATCAGTCC 1888 >seq2701 Length=6067 Score = 93.3 bits (102), Expect = 5e-14 Identities = 131/184 (71%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 61407 ATTACAAACTCTCGGTGAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAG 61466 |||||| ||| ||||| || | | | ||| || |||||||||| || | || Sbjct 5367 ATTACAGCTTCTGAGTGAAAGTTCTTGTTACAACATCCTGCTGCTGTTCTTTGGTTAAAG 5308 Query 61467 AGTTAAAGCGAACTGCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGAT 61526 |||| || || || |||||||| || |||||||| ||||| ||||||||||| || | Sbjct 5307 AGTTGAAACGTACAGCATAACCTGAAACACGGATTGTCAGTGTAGGATATTTTTCAGGGT 5248 Query 61527 GCTTAACTGCATCTTCCAGAGTTTCACGACGCAGAACGTTAACGTTCAGGTGTTGACCAC 61586 | | | |||||| ||| ||||| | |||||||| || ||||| || ||||| | Sbjct 5247 GTTCCATTGCATCGAGCAGTGTTTCTCTGTTGAGAACGTTCACATTCAGATGCTGACCGC 5188 Query 61587 CTTC 61590 |||| Sbjct 5187 CTTC 5184 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 534439533988920