Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alces_20americanus_20[genbank_20GCA_5F900089705.1_202017-06-20] 5,099 sequences; 74,234,735 total letters Query= NC_027402.1 Length=240413 Score E Sequences producing significant alignments: (Bits) Value seq2619 132 7e-26 seq1145 104 4e-17 seq3773 96.9 5e-15 seq3114 96.9 5e-15 seq2451 95.1 2e-14 seq15 93.3 6e-14 seq4380 91.5 2e-13 seq4091 89.7 8e-13 >seq2619 Length=11042 Score = 132 bits (146), Expect = 7e-26 Identities = 225/323 (70%), Gaps = 5/323 (2%) Strand=Plus/Minus Query 197595 TTGAAAGGAAAATAATTGTGAAACAATATCTTGAGATGATGCAGAACATTCTGGACGAGG 197654 |||| || ||| |||| ||| || ||| | || | ||| | || ||| |||| || | Sbjct 2956 TTGAGAGAAAAGTAAT---GAAGCAGTATTTAGAATTAATGAAAAAAATTTTGGATGAAG 2900 Query 197655 GTCATGTTAAAGGCGATCGTACTGGAACAGGGACGCTTTCTGTCTTTGGACGCCAGATGC 197714 || ||| | ||||||||||| || || ||||| ||| | ||||||| |||||| Sbjct 2899 GTGCGCAGAAAAGTGATCGTACTGGTACGGGTACGCTGTCTTTATTTGGACATCAGATGA 2840 Query 197715 GTTTTGAT-TTGCGTAAAGGTTTCCCGTTAGTCACGACTAAGAAACTCCACCTGCGTTCT 197773 | ||| || |||| | ||||||| || |||| || || ||||| || || || Sbjct 2839 GATTTAATCTTGC-TGAAGGTTTTCCTCTAGTGACAACCAAGAAGTGTCATCTTAAATCA 2781 Query 197774 ATTATCCATGAACTGCTGTGGTTCCTTAGTGGGGATACCAACACCAAATATCTGGAAGAT 197833 || || |||||||||| ||||| |||| || |||||||||| |||||| | ||||| Sbjct 2780 ATAATTTATGAACTGCTTTGGTTTCTTAACGGTGATACCAACATAAAATATTTAAAAGAT 2721 Query 197834 AACGGCGTTACCATTTGGCGGGAGTGGCAAGATGAAAATGGGAACCTTGGCCCCCTGTAT 197893 |||| || | || ||| |||||| ||||||||||| | || || || | || Sbjct 2720 CACGGAGTCAGTATCTGGGATGAGTGGGCTGATGAAAATGGTGAACTGGGGCCGATATAC 2661 Query 197894 GGTGCACAATGGAGACGTTGGAA 197916 ||| || |||||| ||||| Sbjct 2660 GGTCACCAGTGGAGATCCTGGAA 2638 >seq1145 Length=6550 Score = 104 bits (114), Expect = 4e-17 Identities = 154/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 197612 GTGAAACAATATCTTGAGATGATGCAGAACATTCTGGACGAGGGTCATGTTAAAG-GCGA 197670 |||||||||||| |||| | || | || ||||||||||| | || ||| |||| Sbjct 2608 GTGAAACAATATATTGACTTACTGAAACGAATCCTGGACGAGGG-CGTGGAGAAGAGCGA 2666 Query 197671 TCGTACTGGAACAGGGACGCTTTCTGTCTTTGGACGCCAGATGCGTTTTGATTTGCGTAA 197730 || || ||||| || ||| | || || ||||| ||||||||| || || || | Sbjct 2667 CCGGACCGGAACGGGCACGATATCAGTGTTTGGCAACCAGATGCGGTTCAATCTGGAGGA 2726 Query 197731 AGGTTTCCCGTTAGTCACGACTAAGAAACTCCACCTGCGTTCTATTATCCATGAACTGCT 197790 || |||||| | |||| || ||||| ||||| ||| || || || |||||||| | Sbjct 2727 CGGATTCCCGCTGCTCACCACGAAGAAGCTCCATCTGAAATCCATCATATATGAACTGTT 2786 Query 197791 GTGGTTCCTTAGTGGGGATACCAACACCAAATATCT 197826 ||||||||| | || ||||||||| ||||| || Sbjct 2787 GTGGTTCCTGAAGGGCGATACCAACGTGAAATACCT 2822 >seq3773 Length=40482 Score = 96.9 bits (106), Expect = 5e-15 Identities = 140/195 (72%), Gaps = 12/195 (6%) Strand=Plus/Plus Query 198338 CAGCTCTATCAACGCAGTGCGGATTTTTTCCTCGGCGTGCCGTTCAACATCGCGTCTTAC 198397 |||||||||||||| || || |||||||||||||| |||||||| || || ||| Sbjct 38964 CAGCTCTATCAACGTTCGGCAGACACCTTCCTCGGCGTGCCTTTCAACATAGCATCGTAC 39023 Query 198398 GCATTACTCGTGCACATGGTTGCCCAGCAGGTTA---ACATGGTGCCGGGCGATTTCAT- 198453 || || || |||| ||| | || |||||| | || | | | ||||||||||| Sbjct 39024 GCTTTGCTGCTGCAGATGATGGC---GCAGGTGACAGACCTCGAAACTGGCGATTTCATT 39080 Query 198454 --TTGGACGGGCGGTGACACACATCTCTACTCTAATCATCTGGAGCAGGCCAAGCTCCAG 198511 || || ||| ||||| || |||||| || || | ||||||||| |||| ||| Sbjct 39081 CATTCTACTGGC---GACACTCACCTCTACCTCAACCACATCGAGCAGGCCCAGCTGCAG 39137 Query 198512 CTGACGCGTGAGCCG 198526 |||||||| || ||| Sbjct 39138 CTGACGCGCGAACCG 39152 >seq3114 Length=59224 Score = 96.9 bits (106), Expect = 5e-15 Identities = 161/233 (69%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 197663 AAAGGCGATCGTACTGGAACAGGGACGCTTTCTGTCTTTGGACGCCAGATGCGTTTTGAT 197722 || || || || || ||||| |||| || | |||| || | ||||||||| ||| | Sbjct 8022 AAGGGTGACCGCACGGGAACGGGGATACTGAGTATCTTCGGCCACCAGATGCGGTTTAAC 8081 Query 197723 TTGCGTAAAGGTTTCCCGTTAGTCACGACTAAGAAACTCCACCTGCGTTCTATTATCCAT 197782 | | || ||||| | |||| || |||||||| |||||| || |||||| || Sbjct 8082 CTCGAGGAGGGATTCCCCCTGCTCACAACGAAGAAACTACACCTGAAGTCGATTATCTAT 8141 Query 197783 GAACTGCTGTGGTTCCTTAGTGGGGATACCAACACCAAATATCTGGAAGATAACGGCGTT 197842 ||||||||||||||||| | || || || |||| | || ||| | || ||||||| Sbjct 8142 GAACTGCTGTGGTTCCTGCGGGGCGACACAAACATCCGCTACCTGAAGGAGCACGGCGTG 8201 Query 197843 ACCATTTGGCGGGAGTGGCAAGATGAAAATGGGAACCTTGGCCCCCTGTATGG 197895 | ||| ||| || ||| || || ||||| | || ||||| | ||||| Sbjct 8202 AGCATCTGGGACGAATGGGCCGACGAGAATGGAGAGCTCGGCCCTGTCTATGG 8254 >seq2451 Length=31860 Score = 95.1 bits (104), Expect = 2e-14 Identities = 138/194 (71%), Gaps = 1/194 (1%) Strand=Plus/Minus Query 197707 CCAGATGCGTTTTGATTTGCGTAAAGGTTTCCCGTTAGTCACGACTAAGAAACTCCACCT 197766 ||||||||| || | || ||||||||||| | |||| || ||||| | ||||| Sbjct 18811 CCAGATGCGCTTCAACCTGGCCGAAGGTTTCCCGCTGCTCACCACCAAGAAGGTGCACCT 18752 Query 197767 GCGTTCTATTATCCATGAACTGCTGTGGTTCCTTAGTGGGGATACCAACACCAAATATCT 197826 | || |||||| | || |||||||||||||| ||| || ||||||| ||| || Sbjct 18751 GAAATCCATTATCTACGAGCTGCTGTGGTTCCTCTCTGGAGACACCAACATTCAATTCCT 18692 Query 197827 GGAAGATAACGGCGTTACCATTTGGCGGGAGTGGCAAGATGAAAATGGGAACCTTGGCCC 197886 | |||| ||||||| |||| ||| || ||| || ||||| || || || ||||| Sbjct 18691 GAAAGACCACGGCGTGTCCATCTGGGACGAATGGGCCGACGAAAACGGCAATCTGGGCCC 18632 Query 197887 CCTGTATGGTGCAC 197900 | | || || |||| Sbjct 18631 CGTTTACGG-GCAC 18619 >seq15 Length=61086 Score = 93.3 bits (102), Expect = 6e-14 Identities = 161/234 (69%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 197663 AAAGGCGATCGTACTGGAACAGGGACGCTTTCTGTCTTTGGACGCCAGATGCGTTTTGAT 197722 || ||||| || ||||| || || ||| ||| ||||| | |||||||| ||| | Sbjct 34129 AAGGGCGACCGCACTGGCACTGGTACGAAAAGTGTGTTTGGTCATCAGATGCGCTTTCGT 34070 Query 197723 TTGCGTAAAGGTTTCCCGTTAGTCACGACTAAGAAACTCCACCTGCGTTCTATTATCCAT 197782 || | | ||||| || | | || || || ||||| || ||| || || || ||| Sbjct 34069 ATGGCTGATGGTTTTCCACTGCTTACTACGAAAAAACTGCATCTGAAGTCAATAATACAT 34010 Query 197783 GAACTGCTGTGGTTCCTTAGTGGGGATACCAACACCAAATATCTGGAAGATAACGGCGTT 197842 |||||||||||||| || ||||| |||||||| | | ||||| |||| || || || Sbjct 34009 GAACTGCTGTGGTTTCTAAGTGGTGATACCAATATCCGCTATCTTCAAGAGAATGGTGTG 33950 Query 197843 ACCATTTGGCGGGAGTGGCAAGATGAAAATGGGAACCTTGGCCCCCTGTATGGT 197896 || ||| || ||| |||||||| || | || ||||| | |||||| Sbjct 33949 CGTATATGGAACGAATGGGCTGATGAAAACGGAGAACTCGGCCCTGTATATGGT 33896 >seq4380 Length=47567 Score = 91.5 bits (100), Expect = 2e-13 Identities = 117/159 (74%), Gaps = 2/159 (1%) Strand=Plus/Plus Query 197669 GATCGTACTGGAACAGGGACGCTTTCTGTCTTTGGACGCCAGATGCGTTTTGATTTGCGT 197728 |||||||| |||||||| || || || || || || ||||||||||| || | || Sbjct 21534 GATCGTACCGGAACAGGTACACTGTCGGTGTTCGGCAATCAGATGCGTTTCAATCT-CGA 21592 Query 197729 A-AAGGTTTCCCGTTAGTCACGACTAAGAAACTCCACCTGCGTTCTATTATCCATGAACT 197787 | | || |||||| | | || || |||||||||||||| || ||||| ||||||| Sbjct 21593 AGACGGATTCCCGATGCTGACAACCAAGAAACTCCACCTCAAATCCATTATTTATGAACT 21652 Query 197788 GCTGTGGTTCCTTAGTGGGGATACCAACACCAAATATCT 197826 ||| |||||||| | || || |||||| ||||| || Sbjct 21653 GCTTTGGTTCCTCAAAGGCGACACCAACGTGAAATACCT 21691 >seq4091 Length=21372 Score = 89.7 bits (98), Expect = 8e-13 Identities = 139/194 (72%), Gaps = 10/194 (5%) Strand=Plus/Plus Query 198338 CAGCTCTATCAACGCAGTGCGGATTTTTTCCTCGGCGTGCCGTTCAACATCGCGTCTTAC 198397 || ||||| || ||| || ||| ||||| |||||||| ||||||||||| || || Sbjct 9328 CAACTCTACCAGCGCTCGGCTGATACCTTCCTGGGCGTGCCATTCAACATCGCCTCGTAT 9387 Query 198398 GCATTACTCGTGCACATGGTTGCCCAG----CAGGTTAACATGGTGCCGGGCGATTTCAT 198453 || | || | || ||| | || ||| | || || || || ||||||| ||||| Sbjct 9388 GCCCTGCTGCTCCAGATGATGGCACAGGTGACGGGCTA-CAAGG---CGGGCGACTTCAT 9443 Query 198454 TTGGACGGGCGGTGACACACATCTCTACTCT-AATCATCTGGAGCAGGCCAAGCTCCAGC 198512 || || ||||| |||||||| ||| || ||| | ||||||||||| |||||| Sbjct 9444 CCACACCACGGGCGACACCCATCTCTA-TCTGAACCATATCGAGCAGGCCAAACTCCAGT 9502 Query 198513 TGACGCGTGAGCCG 198526 |||| ||||||||| Sbjct 9503 TGACCCGTGAGCCG 9516 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 769144573522920