Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alces_20americanus_20[genbank_20GCA_5F900089705.1_202017-06-20] 5,099 sequences; 74,234,735 total letters Query= NC_027983.1 Length=167435 Score E Sequences producing significant alignments: (Bits) Value seq2964 125 8e-24 seq2701 93.3 5e-14 >seq2964 Length=2227 Score = 125 bits (138), Expect = 8e-24 Identities = 617/960 (64%), Gaps = 38/960 (4%) Strand=Plus/Plus Query 41451 GCGATACGAGGAAGATTCAGTGTTACAACACCAAGATTATTACGTCCATCAAGAATTTCA 41510 ||||||||||| |||||||| |||| ||||| ||||| ||||| || || | || | | Sbjct 951 GCGATACGAGGCAGATTCAGACTTACCACACCCAGATTGTTACGGCCGTCGTGGATCTGA 1010 Query 41511 TTACCAGTCGAATCTTTCCATACGCTC--AAGAAACTGCGGCAACCCATTGGAGAAACAG 41568 ||| || || | |||||| | ||| |||||| ||||| |||| | Sbjct 1011 ACACCGTTC---TCCT--CATACGGGGCGAGGAATGAGCGGCAGCCCATCGGAGT--CTT 1063 Query 41569 GAATAGATGAGCCGGTGATAGCTTTAT----TGTTCTTAGCTGAAATAATATCAGGATAC 41624 |||| || ||||| | ||| | || || ||| | | | ||||| |||||| Sbjct 1064 GAAT----GAACCGGTAAC--CTTCACAACCTGATCGTAGTTCAGA--ATATCCGGATAC 1115 Query 41625 ATCCTTTTGCTTGCGCACTCTAGAGCAAGCTGCTTAATATCATAGTTCGGATCGTCTTTG 41684 || || ||| ||||| || ||||| |||| ||| ||||| ||||| ||||| | | Sbjct 1116 ATTCTCTTGGAGGCGCATTCAAGAGCCAGCTTCTTGATATCGTAGTTAGGATCACCCTCT 1175 Query 41685 TAAAGATTAACGCCTTCTTCGACGAACATAACAAGCTTAGGAAAAATAGGAGTTATCCCG 41744 | | | || | || || | || | | || |||||||| |||| | |||| | Sbjct 1176 TTACGGTTCAGTCCCTCCTTGATGGCAAACACCAGCTTAGGGAAAACCGCAGTTCTGTGA 1235 Query 41745 TCACGACCGAGACCTTTAATACGATTTTTCAGAATTGCTTTCTGAATCATTCGTTCAGTC 41804 | || |||||||| ||| | || |||||||| | ||||| |||| ||| | Sbjct 1236 TTGCGGCCGAGACCAGCAATTCTGTTCTTCAGAATAGACTTCTGGATCAGACGTGACTCC 1295 Query 41805 CAGTCAGTTCCTGTACCAAATGTAATTGTTACAAAAGGTGTTTGTCCGTTTGAACTAAAG 41864 ||| ||||| ||| || | ||||| || || || || ||||| || || Sbjct 1296 CAGGATGTTCCCAGACCGAAACCGAGAGTTACGAACGGAGTCTGACCGTTGGAGGTATGC 1355 Query 41865 AGAGTATTTACTTCATATTCATAAGCTTGGAATGCATCGTATACATCTTTTTCTGTTTTA 41924 || || ||||||||||||||| || ||||| || || || || ||||| || Sbjct 1356 AGGGTGTTTACTTCATATTCAAGAGACTGGAAGGCGTCATAGCACTCCTTTTCAGTACGG 1415 Query 41925 GATTGAGCATAATTCAACGCATCAGCGATTTGCCATTTTTCTG-CATCCTC-AATATGTT 41982 | | | ||| | | || ||||| || ||||| | || | |||| || ||| | Sbjct 1416 GCTCGGGCAAAGCTGTCCGGATCAGGAATGTGCCACTCCTCGGCCATCTTCTGATACTTC 1475 Query 41983 TTGCATAGGTGCGTTTAACATAAGGAGAAAGTACTTTATCTACATTAG-CAAAAGTCGTT 42041 || | | | ||||||| || | ||| || | ||| ||| | | || || Sbjct 1476 ATGAAACTCTTGG--TAACATACGGGGCAAGCACCTCATC-ACAGCGGTTGATGGTTGTA 1532 Query 42042 CCGCCGTATTGATGGGAAGCAACCTGTGCAGTAATTTGTGCCATAATTGCAGTAGCAACT 42101 |||||||| |||| |||||||| || | || ||||| ||| || || || Sbjct 1533 CCGCCGTAGATATGGCTGGCAACCTGGGCGATGATCTGTGCGGTAACCGCGGTTGCGGTA 1592 Query 42102 CCAATTGATTTAGGAGTTTCAATCTGTGCATTACCAAGCTTAAATCCGTTCTCAAGCATT 42161 | ||||| ||||| | ||| || | |||||||| | ||| || ||| || |||||| Sbjct 1593 CTGATTGACTTAGGTGATTCGATTTCGGCATTACCCATCTTGAAACCGCGTTCCAGCATT 1652 Query 42162 CCTTTTAAATCTACTAAACA-ACAATTAGTAAAT--GGAAGAGCAGGGGAATAATCAATA 42218 || | ||| | | | || ||| || | | || |||||| | || ||||| || | | Sbjct 1653 CCGCCGACATCGA-TCAGCATACAGTT-GAACATCGGGAAGAAC-GGTGAATAGTCGAGA 1709 Query 42219 TCATGGAAATGAATAATTCCGCTTTCATGCGCTTTCATAA-TAAAAGACGGGACCAT--- 42274 || || ||||| || || |||||||| ||| ||| || | || || | ||| Sbjct 1710 TCGTGAAAATGGATCTCCCCTCTTTCATGGGCTCTCACAACTTCCTGA-GGAAGCATGTG 1768 Query 42275 ATTTTTGGCAATGTGTTTAGACACAATACCGGCCATAAGGTCCCGTTGAGTTGGAAAAAC 42334 | ||| ||| ||| | |||||||| || | |||||| || || || |||| ||| Sbjct 1769 CTGTTTTGCATAGTGGCGTGCAACAATACCTGCAAGAAGGTCACGCTGGGTCGGAATAAC 1828 Query 42335 ACGAGAATCTTTATTAGCATTCTCGTTTAAAAGGTCTTTATTAGTTTTATGAATCAATCC 42394 || || || ||||||||||| | || ||| ||| | | || |||| ||| Sbjct 1829 CTTGCTGTCCTTGTTGGCATTCTCGTTAAGCAGATCTGCATTTGACTGATCGATCAGTCC 1888 >seq2701 Length=6067 Score = 93.3 bits (102), Expect = 5e-14 Identities = 131/184 (71%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 60765 ATTACAAACTCTCAGTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAG 60824 |||||| ||| ||| || || | | | ||| || |||||||||| || | || Sbjct 5367 ATTACAGCTTCTGAGTGAAAGTTCTTGTTACAACATCCTGCTGCTGTTCTTTGGTTAAAG 5308 Query 60825 AGTTAAAGCGAACTGCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGAT 60884 |||| || || || |||||||| || |||||||| ||||| ||||||||||| || | Sbjct 5307 AGTTGAAACGTACAGCATAACCTGAAACACGGATTGTCAGTGTAGGATATTTTTCAGGGT 5248 Query 60885 GCTTAACTGCATCTTCCAGAGTTTCGCGACGCAGAACGTTAACGTTCAGGTGTTGACCAC 60944 | | | |||||| ||| ||||| | |||||||| || ||||| || ||||| | Sbjct 5247 GTTCCATTGCATCGAGCAGTGTTTCTCTGTTGAGAACGTTCACATTCAGATGCTGACCGC 5188 Query 60945 CTTC 60948 |||| Sbjct 5187 CTTC 5184 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 535629858115800