Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alces_20americanus_20[genbank_20GCA_5F900089705.1_202017-06-20] 5,099 sequences; 74,234,735 total letters Query= NC_027996.1 Length=175720 Score E Sequences producing significant alignments: (Bits) Value seq240 104 3e-17 seq4414 84.2 2e-11 seq2941 82.4 9e-11 >seq240 Length=9876 Score = 104 bits (114), Expect = 3e-17 Identities = 141/194 (73%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 8093 AGTTAAACTTATCTATATTGACCCACCTTATAATACAGGCAATACTAGTTTTAATTATAA 8152 ||| || || || ||||||||||| || |||||||| || | || ||| ||||| Sbjct 3375 AGTGAAGCTAATATATATTGACCCTCCATATAATACGGGGAGCGACAGCTTTGGATATAA 3434 Query 8153 CGACAAATTTAAACACACTACTTGGCTTACTTTTATGAAAAATCGCCTTGAAATTGCTAG 8212 |||||| ||||| ||| | || ||||| || |||||||| ||| | || || | || || Sbjct 3435 CGACAACTTTAACCACTCGACGTGGCTGACGTTTATGAAGAATAGGCTGGAGGTGGCGAG 3494 Query 8213 AGAATTTTTAAGAGATGATGGTGTAATATTCGT-TCAATGTGACGATAATGAACAAGCAT 8271 || || | | || ||||| | ||| || | || || |||||||| |||||||| | Sbjct 3495 GGAGTTGCTGAAGGAAGATGGGGGAATGTTTATCTCGAT-AGACGATAAGGAACAAGCGT 3553 Query 8272 ATTTAAAAGTACTT 8285 ||||||| || ||| Sbjct 3554 ATTTAAAGGTGCTT 3567 >seq4414 Length=23792 Score = 84.2 bits (92), Expect = 2e-11 Identities = 55/61 (90%), Gaps = 0/61 (0%) Strand=Plus/Minus Query 112373 GTAGCTCAGCTGGATAGAGCGACAGCCTTCTAAGCCGTAGGTCAAAGGTTCGAGTCCTTT 112432 |||||||||||||||||||| |||||||||||||| || |||||| ||||||| ||| || Sbjct 13767 GTAGCTCAGCTGGATAGAGCAACAGCCTTCTAAGCTGTGGGTCAAGGGTTCGAATCCCTT 13708 Query 112433 C 112433 | Sbjct 13707 C 13707 >seq2941 Length=2426 Score = 82.4 bits (90), Expect = 9e-11 Identities = 51/55 (93%), Gaps = 0/55 (0%) Strand=Plus/Minus Query 112376 GCTCAGCTGGATAGAGCGACAGCCTTCTAAGCCGTAGGTCAAAGGTTCGAGTCCT 112430 ||||||||||||||||| || |||||||||||||||||||| |||||||| |||| Sbjct 2337 GCTCAGCTGGATAGAGCAACGGCCTTCTAAGCCGTAGGTCATAGGTTCGAATCCT 2283 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562140168307200