Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alces_20americanus_20[genbank_20GCA_5F900089705.1_202017-06-20] 5,099 sequences; 74,234,735 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq1956 107 2e-18 seq173 107 2e-18 seq3869 95.1 2e-14 seq1580 91.5 2e-13 seq3028 87.8 2e-12 seq4856 86.0 8e-12 seq3888 86.0 8e-12 seq1764 82.4 1e-10 >seq1956 Length=35610 Score = 107 bits (118), Expect = 2e-18 Identities = 249/372 (67%), Gaps = 15/372 (4%) Strand=Plus/Plus Query 11452 ATCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAGTGGCCGC 11511 ||| || || || | ||||| || || | |||||| |||||| | | ||||| ||||| Sbjct 3404 ATCGAAGCGTCCGGCTCGAAGAAGAGCCTTATCAAGAATATCCGCCCTGTTAGTAGCCGC 3463 Query 11512 AATAACCACAATGCCAGTCTCATTGTCAAAGCCATCCATCTCGGTGAGTAATTGATTAAT 11571 || || | | || || | | |||| |||||||| ||||| ||||| || |||| Sbjct 3464 CATGACTATCACACCCGTATTAGCTCCAAATCCATCCATTTCGGTAAGTAACTGGTTAAG 3523 Query 11572 TGTTTGTTCTCTCTCATCATTTGCTGGCATACCACCAGCACTGCGTTGCTTGCCC-ACC- 11629 ||| ||| ||||| ||||| | | | || | | | | | | | ||||||| ||| Sbjct 3524 TGTGCTTTCCCTCTCGTCATTGGATTGTATGCTAGC--CTTTCCACTTCTTGCCCTACCA 3581 Query 11630 ---GCATCAATCTCATCAATGAAGACAATACATGG----TTGATTTTCGCGGGCGATTTC 11682 |||||||| ||||||||||| ||||| ||||| || ||| || | || Sbjct 3582 ATAGCATCAATTTCATCAATGAAAACAATGCATGGAGCTTTCTGTTTAGCTTG----TTG 3637 Query 11683 AAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCGGC 11742 ||||| || | ||||||| || || ||||| |||||||| ||||| || | | | Sbjct 3638 GAAGAGGTCTCTAACCCTTGATGCTCCAACACCTACAAACATTTCCACGAAATCAGAACC 3697 Query 11743 AGAGCACTGGATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTT 11802 ||| | || | |||||| | ||| || || | |||| ||||| | ||||| Sbjct 3698 AGATAGAGAAAAAAACGAGACATTAGCTTCGCCTGCAACGGCTTTAGCGAGCAAAGTCTT 3757 Query 11803 TCCCGTACCTGG 11814 || || ||||| Sbjct 3758 ACCAGTTCCTGG 3769 >seq173 Length=30558 Score = 107 bits (118), Expect = 2e-18 Identities = 204/295 (69%), Gaps = 4/295 (1%) Strand=Plus/Plus Query 11630 GCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCG-GGCGATTTCAAAGAG 11688 |||||||| || || ||||||| || || || | ||| | | ||| | | ||||| Sbjct 2911 GCATCAATTTCGTCGATGAAGATTATGCAAGGG-GCTTTGCTCTTGGCTTTGGCGAAGAG 2969 Query 11689 ATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCGGCAGAGCA 11748 |||||||| | | || || || || ||||||||||| || |||| | | |||| || Sbjct 2970 GTCGCGAACACGACTTGCTCCGACGCCTACAAACATCTCGACGAAGTCGGAGCCAGA-CA 3028 Query 11749 CTG-GATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCG 11807 | || |||||| ||||| | ||| || || | |||| ||| ||||| ||||| || | Sbjct 3029 TGGAGAAGAATGGTACATTGGCTTCGCCAGCAACGGCTTTGGCAAGGAGCGTCTTGCCTG 3088 Query 11808 TACCTGGCTTACCCGCGAGAAGGGCGCCTCGGGGGATCTTGGCACCACTTCCAAAATATC 11867 | || || || |||| ||||| || || || |||||| |||| | | ||| Sbjct 3089 TGCCAGGAGGGCCTACGAGTAGGGCTCCACGAGGAATCTTGCCACCGAGTTCGGTATACT 3148 Query 11868 TCTCGGGTTGCTTGAGAAAATCCACAATCTCTTCAAGTTCATCTTTGGCCGCGTC 11922 | ||||| || || || || ||||||||||| ||||| | ||| || |||| Sbjct 3149 TGTCGGGGTGGCGAAGGAATTCGACAATCTCTTCGAGTTCTTGTTTTGCTCCGTC 3203 >seq3869 Length=139515 Score = 95.1 bits (104), Expect = 2e-14 Identities = 207/306 (68%), Gaps = 12/306 (4%) Strand=Plus/Plus Query 11446 CTTGCGATCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAGT 11505 ||| | ||||||||| ||||| || | | ||| |||||| |||||||| || || || Sbjct 105908 CTTTCTATCAAAACGTCCCGGACGCATTATGGCTGTATCAAGAATATCCACACGGTTTGT 105967 Query 11506 GGCCGCAATAACCACAATGCCAGTCTCATTGTCA---AAGCCATCCATCTCGGTGAGTAA 11562 ||| || || || | || || ||||| | || |||||||||||| || | Sbjct 105968 GGCAGCCATTACAATTATTCCT---TCATTAACTCCGAACCCATCCATCTCGACAAGGAG 106024 Query 11563 TTGATTAATTGTTTGTTCTCTCTCATCAT---TTGCTGGCATACCACCAGCACTGCGTTG 11619 ||||| | ||| || |||||||| |||| | | ||| || | ||| ||| Sbjct 106025 CTGATTCAATGTCTGCTCTCTCTCGTCATGGCCTCCGCCCATGCCGGTACCACGACGT-- 106082 Query 11620 CTTGCCCACCGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGAT 11679 |||| | |||||||| ||||| ||||| || |||||||| || ||||| ||| Sbjct 106083 CTTG-CAACCGCATCTATCTCGTCAATAAACACAATACAAGGAGCATTTTGCTTGGCTTC 106141 Query 11680 TTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGC 11739 || || | ||| | || | || || ||||| ||||||||||| ||||| | || Sbjct 106142 CTCGAATAAATCCCTTACACGCGATGCTCCGACACCTACAAACATCTCAACAAAATCTGA 106201 Query 11740 GGCAGA 11745 | |||| Sbjct 106202 GCCAGA 106207 >seq1580 Length=60959 Score = 91.5 bits (100), Expect = 2e-13 Identities = 210/307 (68%), Gaps = 11/307 (4%) Strand=Plus/Plus Query 11436 CCACTTGGATCTTGCGATCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCA 11495 |||| | |||| || || || || || | |||||| ||||| ||||| || || Sbjct 60612 CCACGTAAATCTGACGGTCGAAGCGTCCGGCGCGAAGCAGGGCACGGTCAAGTATGTCGG 60671 Query 11496 CGCGATTAGTGGCCGCAATAACCACAATGCCAGTCTCATTGTCAAAGCCATCCATCTCGG 11555 | || || ||||| || || || | | ||| | | || | || ||||||||||| | Sbjct 60672 CACGGTTGGTGGCGGCCATTACGATGACGCCGTTGTTGGTGCCGAATCCATCCATCTCAG 60731 Query 11556 TGAGTAATTGATTAATTGTTTGTTCTCTC--TCATCATTTGC--TGG-CATACCACCAGC 11610 |||||| || || | ||| |||||| | || ||||| || || || || ||| Sbjct 60732 TGAGTAGCTGGTTTAATGT--GTTCTCGCGTTCGTCATTGGCATTGCTCAGTCCGCCACG 60789 Query 11611 ACTGCGTT-GCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTT 11669 ||||| || | ||||| || || || || || || |||| |||||| || |||||| Sbjct 60790 GCTGCGGGCGCGT-CCCACAGCGTCGATTTCGTCGATAAAGATAATACAGGGA-GATTTT 60847 Query 11670 CGCG-GGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCC 11728 | ||| ||| || || ||||| || | | |||||| || || ||||||||||| Sbjct 60848 TTCTTGGCTTCTTCGAAAAGGTCGCGTACACGTGAGGCACCAACTCCGACAAACATCTCG 60907 Query 11729 ACAAAGT 11735 ||||||| Sbjct 60908 ACAAAGT 60914 >seq3028 Length=109478 Score = 87.8 bits (96), Expect = 2e-12 Identities = 322/493 (65%), Gaps = 10/493 (2%) Strand=Plus/Minus Query 11429 GGAAGACCCACTTGGATCTTGCGATCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGG 11488 ||||| |||| || |||| | |||||||| || | | | ||| || | ||| || Sbjct 21629 GGAAGGTCCACATGAATCTGTCTGTCAAAACGTCCGGCTCTTAAGAGAGCTTTATCGAGA 21570 Query 11489 ATATCCACGCGATTAGTGGCCGCAATAACCACAATGCCAGTCTCATTGTCAAAGCCATCC 11548 ||||| | || || || ||||| | | | || ||| | | || ||||||| ||| Sbjct 21569 ATATCAGCTCGGTTTGTCGCCGCTAATATAATTATACCACTGTTCGTGCCAAAGCCGTCC 21510 Query 11549 ATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGCATACCACCA 11608 ||||| || | ||||| || | || ||||||||| || || | ||| | || Sbjct 21509 ATCTCAGTCAACAATTGGTTGAGAGTGCTTTCTCTCTCGTCGTTACCACCCATGGAAACA 21450 Query 11609 GCACTGCGT--TGCTTGCCC-ACCGCATCAATCTCATCAATGAAGACAATACATGGTTGA 11665 | ||| | ||| | || | || |||||||| || |||||||| || || || || Sbjct 21449 GACTTGCTTCTTGCACGTCCTATGGCGTCAATCTCGTCTATGAAGACTATGCAAGGA-GA 21391 Query 11666 TTT-TCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAAACAT 11724 ||| || ||| | ||||| || || || | | || ||||||||||| ||||| Sbjct 21390 TTTCTCCTTGGCTTGTCTGAAGAGGTCACGTACTCGGCTTGCTCCCACACCAACGAACAT 21331 Query 11725 CTCCACAAAGTTTGCGGCAGAG-CACTGGATGAATGGGACATTTGATTCACCCGCGATGG 11783 |||||| || | | | | ||| ||| || |||||| || || ||||| || | || Sbjct 21330 CTCCACGAACTCAGAGCCGGAGAGACT-GAAGAATGGCACTCCTGCCTCACCAGCCACGG 21272 Query 11784 CTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCTCGGGGGA 11843 || || | || ||||| || || || || ||| |||| || || || || | Sbjct 21271 CTTTCGCCAACAGAGTCTTACCTGTTCCCGGAGGACCTACGAGCAGTGCACCCTTTGGAA 21212 Query 11844 TCTTGGCACC-ACTTCCAAAATATCTCTCGGGTTGCTTGAGAAAATCCACAATCTCTTCA 11902 |||| | || | ||| ||| ||| || | ||||| || ||||| ||||||| Sbjct 21211 TCTTTCCGCCGAGGTCC-GTGTATTTCTTAGGATTTTTGAGGAACTCCACTATCTCTTGC 21153 Query 11903 AGTTCAT-CTTTG 11914 | ||| | ||||| Sbjct 21152 ACTTCCTGCTTTG 21140 >seq4856 Length=24448 Score = 86.0 bits (94), Expect = 8e-12 Identities = 189/281 (67%), Gaps = 3/281 (1%) Strand=Plus/Minus Query 11453 TCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAGTGGCCGCA 11512 |||||||| ||||| | || | |||| ||||||||||| | || || || |||||| Sbjct 14046 TCAAAACGGCCCGGTCTGAGCAAGGCGGGGTCAAGGATATCAGCACGGTTTGTCGCCGCA 13987 Query 11513 ATAACCACAATGCCAGTCTCATTGTCAAAGCCATCCATCTCGGTGAGTAATTGATTAATT 11572 | || | || || | || || |||||||| ||||| ||| | | || || | | Sbjct 13986 AGAATGATAAGCCCCTTTTCGTTATCAAAGCCGTCCATTTCGACCAAAAGCTGGTTTAAT 13927 Query 11573 GTTTGTTCTCTCTCATCATTTGCTGGCATACCACCAGCACTGCGTTGCTTGCCCACCGCA 11632 || || |||| ||| ||| ||||| | | | ||| | || || || | || Sbjct 13926 GTCTGCTCTCGCTCGTCA-TTGCTAGAAAA--ACCGTTCATTCGGCTTTTTCCGATTGCG 13870 Query 11633 TCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCG 11692 ||||| || ||||| |||| |||||| || ||||| || || | || | || Sbjct 13869 TCAATTTCGTCAATAAAGATAATACAAGGAGCCTTTTCACGAGCCTGCTTGAACAAGTCA 13810 Query 11693 CGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAA 11733 || || | ||||||| |||||||| |||||||| ||||| Sbjct 13809 CGGACTCGGCTGGCACCGACACCAACGAACATCTCTACAAA 13769 >seq3888 Length=36294 Score = 86.0 bits (94), Expect = 8e-12 Identities = 194/286 (68%), Gaps = 8/286 (3%) Strand=Plus/Plus Query 11452 ATCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAGTGGCCGC 11511 |||||| || ||||| ||||| ||||| | |||||| | || | ||| || ||||| Sbjct 15218 ATCAAATCGTCCCGGACGAAGAAGGGCCTTATCAAGAACCTCTGGTCTATTTGTAGCCGC 15277 Query 11512 -AATAACCACAATGCCAGTCTCATTGTCAAAGCCATCCATCTCGGTGAGTAATTGATTAA 11570 |||| ||| || | | ||||| ||||||||||| | | ||||||||||| Sbjct 15278 TAATATAAGCAAA-CCTTTGTTGGAATCAAAACCATCCATCTCAGACAATAATTGATTAA 15336 Query 11571 TTGTTTGTTCTCTCTCATCATTTGCT--GGCATACCACCAG-CACTGCGTTGCTTGCCCA 11627 ||| || |||||||| |||||| || |||| || ||| || ||| || | Sbjct 15337 GTGTCTGCTCTCTCTCGTCATTTCCTCCACCATAATGTGAGTCACGGC---TCTTTCCTA 15393 Query 11628 CCGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGA 11687 || ||||||||||| || || || ||||| ||| | | | || || ||| | Sbjct 15394 TGGCGTCAATCTCATCGATAAACACTATACAAGGTGCAACCTTCTGAGCCTCTTTAAACA 15453 Query 11688 GATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAA 11733 ||| | ||| | ||||| |||||||||||||| || ||||| Sbjct 15454 AATCCCTAACACGAGAAGCACCTACACCAACAAACATTTCTACAAA 15499 >seq1764 Length=18778 Score = 82.4 bits (90), Expect = 1e-10 Identities = 206/310 (66%), Gaps = 10/310 (3%) Strand=Plus/Plus Query 11429 GGAAGACCCACTTGGATCTTGCGATCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGG 11488 ||| |||| || | | || | ||||||||| || || || | | || | ||||| Sbjct 15724 GGACGACCTACGTATACTTTTCTATCAAAACGTCCAGGACGCATAATCGCCTGGTCAAGT 15783 Query 11489 ATATCCACGCGATTAGTGGCCGCAATAACCACAATGCCAGTCTCATTGTCA---AAGCCA 11545 ||||| ||||| || || || || ||||| | |||||| || ||| || || ||| Sbjct 15784 ATATCTACGCGGTTGGTAGCTGCCATAACAATAATGCCT---TCGTTGACACCAAAACCA 15840 Query 11546 TCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGCATACC- 11604 |||||||| || | ||||| | || || || | ||| |||| | | || || Sbjct 15841 TCCATCTCAACAAGCAGCTGATTCAAAGTCTGCTCGCGCTCGTCATGTCC--GCCGCCCA 15898 Query 11605 -ACCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACATGGTT 11663 ||| | || |||| | || | || ||||| |||||||| || || || ||||| || Sbjct 15899 TACCTGTACCGCGTCGTCTGGCAACAGCATCTATCTCATCGATAAACACTATACACGGCG 15958 Query 11664 GATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAAACA 11723 ||||| ||| | ||| | ||| || || | ||||| || ||||| |||| Sbjct 15959 CATTTTGTTTGGCCTCCTGAAACAAATCACGTACACGGGAAGCACCTACTCCAACGAACA 16018 Query 11724 TCTCCACAAA 11733 |||| ||||| Sbjct 16019 TCTCTACAAA 16028 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627991970810400