Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alces_20americanus_20[genbank_20GCA_5F900089705.1_202017-06-20] 5,099 sequences; 74,234,735 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq140 127 3e-24 seq4856 107 2e-18 seq173 93.3 5e-14 seq1580 91.5 2e-13 seq4587 87.8 2e-12 seq1764 87.8 2e-12 >seq140 Length=204551 Score = 127 bits (140), Expect = 3e-24 Identities = 179/245 (73%), Gaps = 6/245 (2%) Strand=Plus/Plus Query 14150 TCAAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCA 14209 ||||| |||||||||||| |||||||||||| | ||||| || ||||||||||| | Sbjct 37235 TCAAATCCATCCATCTCAACCAAGAGTTGATTTAGTGTTTGCTCACGTTCATCATTACC- 37293 Query 14210 GGCA--TACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGA 14267 | || || ||| |||| ||| || || || || ||||||||||| || |||| | Sbjct 37294 GCCACCTAA-ACCGGCACCGCGATGACGCCCAACCGCATCAATTTCATCAATAAAAAGCA 37352 Query 14268 TACATGGTTGATTTTCACGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACAC 14327 || || ||||| || |||| ||||| ||||| | | |||||||||| Sbjct 37353 AGCACGGCGCATTTTTCTTTGCTTGCGCAAACATATCGCGCACACGCGATGCACCGACAC 37412 Query 14328 CCACAAACATCTCCACAAAATTGGCGGCGGAACATTG-GATGAAGGGGACGTTAGATTCA 14386 ||||||||||||||||||||| | | ||||| |||| || || || || |||| |||| Sbjct 37413 CCACAAACATCTCCACAAAATCCGAGCCGGAA-ATTGAGAAAAACGGCACATTAGCTTCA 37471 Query 14387 CCCGC 14391 || || Sbjct 37472 CCGGC 37476 >seq4856 Length=24448 Score = 107 bits (118), Expect = 2e-18 Identities = 194/283 (69%), Gaps = 3/283 (1%) Strand=Plus/Minus Query 14066 TCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGCG 14125 ||||| || || || | ||| | |||| ||||||||||||| ||||| |||||||| Sbjct 14046 TCAAAACGGCCCGGTCTGAGCAAGGCGGGGTCAAGGATATCAGCACGGTTTGTCGCCGCA 13987 Query 14126 ATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTCAAGAGTTGATTGATG 14185 | | | | ||| | |||||||||||||| ||||| || ||| || || || | Sbjct 13986 AGAATGATAAGCCCCTTTTCGTTATCAAAGCCGTCCATTTCGACCAAAAGCTGGTTTAAT 13927 Query 14186 GTTTGTTCGCGTTCATCATTCGCAGGCATACCACCCGCACTGCGTTGCTTACCGACGGCG 14245 || || || || || ||||| || | ||| | | || | || |||| ||| Sbjct 13926 GTCTGCTCTCGCTCGTCATTGCTAGAAAAACCGTTCATTCGGCTT---TTTCCGATTGCG 13870 Query 14246 TCAATTTCATCGATGAAAACGATACATGGTTGATTTTCACGGGCAACTTCAAAGATATCT 14305 |||||||| || || || | ||||| || |||||||| || | || | || Sbjct 13869 TCAATTTCGTCAATAAAGATAATACAAGGAGCCTTTTCACGAGCCTGCTTGAACAAGTCA 13810 Query 14306 CGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAAT 14348 || |||| ||||||||||||| || |||||||| ||||||| Sbjct 13809 CGGACTCGGCTGGCACCGACACCAACGAACATCTCTACAAAAT 13767 >seq173 Length=30558 Score = 93.3 bits (102), Expect = 5e-14 Identities = 273/409 (67%), Gaps = 19/409 (5%) Strand=Plus/Plus Query 14153 AAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCAGGC 14212 ||||| ||||| || ||||||||||| |||| ||| | || ||||| || || || || Sbjct 2818 AAGCCGTCCATTTCTGTCAAGAGTTGGTTGAGGGTGTTCTCACGTTCTTCGTT-GCTGGA 2876 Query 14213 ATACCACCCG-------CAC-TGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAA 14264 | | ||| ||| |||| | | |||| ||| |||||||| |||||||| | Sbjct 2877 GAATCCTCCGTTTTTGCCACGTGCG---CGT-CCGATGGCATCAATTTCGTCGATGAAGA 2932 Query 14265 CGATACATGGTTGATTTTCACG-GGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCG 14323 || || || | ||| | | ||| | |||| || || || | | || ||| Sbjct 2933 TTATGCAAGGG-GCTTTGCTCTTGGCTTTGGCGAAGAGGTCGCGAACACGACTTGCTCCG 2991 Query 14324 ACACCCACAAACATCTCCACAAAATTGGCGGCGGAACATTG-GATGAAGGGGACGTTAGA 14382 || || ||||||||||| || || | || | | | |||| | || ||| || || || | Sbjct 2992 ACGCCTACAAACATCTCGACGAAGTCGGAGCCAG-ACATGGAGAAGAATGGTACATTGGC 3050 Query 14383 TTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGGTTTCCCTGCGAGAAG 14442 ||| || || | |||| ||| ||||| ||||| || || || || ||| |||| || Sbjct 3051 TTCGCCAGCAACGGCTTTGGCAAGGAGCGTCTTGCCTGTGCCAGGAGGGCCTACGAGTAG 3110 Query 14443 GGCACCACGTGGGATCCTGGCACC-ACTGCCAAAGTAGCGTTCAGGTTGTTTAAGGAAGT 14501 ||| ||||| || ||| || |||| | | | | || || || || |||||| | Sbjct 3111 GGCTCCACGAGGAATCTTGCCACCGAGTTCGGTA-TACTTGTCGGGGTGGCGAAGGAATT 3169 Query 14502 CCACGATTTCTTCCAATTCATCCTTCGCGGCGTCGATGCCTTCAACGTC 14550 | || || ||||| | ||| | || || |||||| ||| | ||||| Sbjct 3170 CGACAATCTCTTCGAGTTCTTGTTTTGCTCCGTCGAGACCTGCCACGTC 3218 >seq1580 Length=60959 Score = 91.5 bits (100), Expect = 2e-13 Identities = 230/341 (67%), Gaps = 9/341 (3%) Strand=Plus/Plus Query 14057 ATCTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTC 14116 |||| ||| || ||||| || | ||| || ||||| |||||| || || ||||| Sbjct 60620 ATCTGACGGTCGAAGCGTCCGGCGCGAAGCAGGGCACGGTCAAGTATGTCGGCACGGTTG 60679 Query 14117 GTCGCCGCGATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTCAAGAGT 14176 || || || || || | || ||| | | | | | || |||||||||||||| | || Sbjct 60680 GTGGCGGCCATTACGATGACGCCGTTGTTGGTGCCGAATCCATCCATCTCAGTGAGTAGC 60739 Query 14177 TGATTGATGGTTTGTTCGCGTTCATCATTCGCA---GGCATACCACCCGCACTGC-GTTG 14232 || || | || | |||||||| ||||| ||| || || || |||| | | Sbjct 60740 TGGTTTAATGTGTTCTCGCGTTCGTCATTGGCATTGCTCAGTCCGCCACGGCTGCGGGCG 60799 Query 14233 CTTACCGACGGCGTCAATTTCATCGATGAAAACGATACATGGTTGATTTTCAC-GGGCAA 14291 | | || || ||||| ||||| ||||| || | ||||| || |||||| | ||| Sbjct 60800 CGT-CCCACAGCGTCGATTTCGTCGATAAAGATAATACA-GGGAGATTTTTTCTTGGCTT 60857 Query 14292 CTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGG 14351 |||| || | || || || | |||||| || || ||||||||||| || ||| | | Sbjct 60858 CTTCGAAAAGGTCGCGTACACGTGAGGCACCAACTCCGACAAACATCTCGAC-AAAGTCG 60916 Query 14352 CGGCGGAACATTG-GATGAAGGGGACGTTAGATTCACCCGC 14391 | | |||||| || ||| || ||||||| || ||||| Sbjct 60917 CTTCCCGACATTGAGAAGAAAGGCACGTTAGCCTCGCCCGC 60957 >seq4587 Length=20029 Score = 87.8 bits (96), Expect = 2e-12 Identities = 182/265 (69%), Gaps = 6/265 (2%) Strand=Plus/Minus Query 14087 AGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGCGATGACAACGATGCCCGTC--T 14144 || |||| |||||| ||||| |||||| || || || || | | || || || | Sbjct 15670 AGTGCGTGGTCAAGAATATCCGGGCGGTTTGTTGCAGCAATAATGATAATTCCT-TCATT 15612 Query 14145 CGTTATCAAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCAT 14204 || | ||||||| ||||| ||| || || ||||| | |||||||| ||||| |||| Sbjct 15611 CGCTG-CAAAGCCGTCCATTTCAACTAAAAGCTGATTCAAAGTTTGTTCACGTTCGTCAT 15553 Query 14205 TCGCAG-GCATACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAA 14263 | | || || ||| || | |||||| || || ||||||||||| || |||||| Sbjct 15552 GCCCGCCGCTTAT-ACCTGCGCCGCGTTGACGTCCTACCGCGTCAATTTCGTCAATGAAA 15494 Query 14264 ACGATACATGGTTGATTTTCACGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCG 14323 | || || || ||||| || | |||| | ||| || ||||| || || Sbjct 15493 ATTATGCAGGGCGAATTTTTCTTTGCCTGTGCAAATAAATCACGAACTCTTGACGCGCCA 15434 Query 14324 ACACCCACAAACATCTCCACAAAAT 14348 ||||| |||||||| || ||||||| Sbjct 15433 ACACCTACAAACATTTCAACAAAAT 15409 >seq1764 Length=18778 Score = 87.8 bits (96), Expect = 2e-12 Identities = 198/291 (68%), Gaps = 14/291 (5%) Strand=Plus/Plus Query 14065 ATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGC 14124 |||||| || || || || | | || | |||||| ||||| | |||||| || || || Sbjct 15747 ATCAAAACGTCCAGGACGCATAATCGCCTGGTCAAGTATATCTACGCGGTTGGTAGCTGC 15806 Query 14125 GATGACAACGATGCCCGTCTCGTT---ATCAAAGCCATCCATCTCAGTCAAG-AGTTGAT 14180 || |||| ||||| ||||| | |||| |||||||||||| |||| || |||| Sbjct 15807 CATAACAATAATGCCT---TCGTTGACACCAAAACCATCCATCTCA-ACAAGCAGCTGAT 15862 Query 14181 TGATGGTTTGTTCGCGTTCATCA--TTCGCAG-GCATACCACCCGCACTGCGTTGCTTAC 14237 | | || || ||||| || ||| | ||| | ||| ||| | || |||| | | Sbjct 15863 TCAAAGTCTGCTCGCGCTCGTCATGTCCGCCGCCCAT---ACCTGTACCGCGTCGTCTGG 15919 Query 14238 CGACGGCGTCAATTTCATCGATGAAAACGATACATGGTTGATTTTCACGGGCAACTTCAA 14297 | || || || || |||||||| || || ||||| || ||||| ||| | | || Sbjct 15920 CAACAGCATCTATCTCATCGATAAACACTATACACGGCGCATTTTGTTTGGCCTCCTGAA 15979 Query 14298 AGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAAT 14348 | | ||| || || | ||||| || || || |||||||| ||||||| Sbjct 15980 ACAAATCACGTACACGGGAAGCACCTACTCCAACGAACATCTCTACAAAAT 16030 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618395782486440