Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alces_20americanus_20[genbank_20GCA_5F900089705.1_202017-06-20] 5,099 sequences; 74,234,735 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq320 136 1e-26 seq1740 125 2e-23 seq3881 122 3e-22 seq4549 120 9e-22 seq145 113 1e-19 >seq320 Length=5459 Score = 136 bits (150), Expect = 1e-26 Identities = 244/354 (69%), Gaps = 7/354 (2%) Strand=Plus/Plus Query 349536 AAGAAATTTCATCAATGGT--TTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGG 349593 ||||||| || | ||||| || || || |||||| | | ||| |||| ||| | || Sbjct 3341 AAGAAATATCGGCTATGGTGCTTCAG--AAGATGAAGAAGACTGCCGAAGATTATCTTGG 3398 Query 349594 TGAAACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTC 349653 | || | | | || || || || || ||||||||||| ||||| || || |||||| Sbjct 3399 TCAAGAAATCAGCGAAGCCGTCATCACCGTACCAGCCTACTTTAACGACGCACAGCGTCA 3458 Query 349654 TGCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACC 349713 ||||||||||| |||||| ||||| || | || || | | || | || || || Sbjct 3459 GGCAACAAAAGAAGCTGGCGAAATTGCAGGTCTTAAAGTCCGTCGTATTGTCAACGAGCC 3518 Query 349714 CACTGCTGCAGCAATTGCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCT 349773 || || |||||| | || ||||| ||||| || | || | | || | || ||| | Sbjct 3519 AACGGCAGCAGCACTCGCCTATGGTCTTGACAAGAAGA---ATAAGGACATGAAGATTGT 3575 Query 349774 TATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAAT 349833 | | || || | ||||||||||| ||||| || |||| ||||| || || | Sbjct 3576 TGTATTCGACTGCGGTGGTGGTACACACGATGTCTCTGTACTTGAACTTGGTGACGGTGT 3635 Query 349834 TTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGA 349887 |||||||||||| | || | || |||||||| |||||||| || || || || Sbjct 3636 GTTTGAAGTTAAATCGACCGACGGCGATACACACCTTGGTGGCGACGACTTCGA 3689 >seq1740 Length=34420 Score = 125 bits (138), Expect = 2e-23 Identities = 209/297 (70%), Gaps = 10/297 (3%) Strand=Plus/Minus Query 349594 TGAAACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTC 349653 ||||| ||| || || |||||||| |||||||| || || || |||||||| |||||| Sbjct 5918 TGAAAAAGTTACAGAGGCTGTTATCACTGTACCTGCTTACTTCAATGATGCACAGCGTCA 5859 Query 349654 TGCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACC 349713 || ||||||||||| |||| || || || | |||| | || || || || || Sbjct 5858 GGCTACAAAAGATGCCGGCAAGATCGCAGGACTTGATGTAAAGCGTATCATCAACGAGCC 5799 Query 349714 CACTGCTGCAGCAATTGCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCT 349773 || || ||||| |||||||||| ||||| || ||| || || | || ||| | Sbjct 5798 TACAGCAGCAGCTCTTGCATATGGTCTTGACAA------TGAGCAGGAGCAGAAGATTAT 5745 Query 349774 TATTTTTGATTTAGGTGGTGGTACTTTTGATGTATC-ACTACTAACACTTGAAGAGGGAA 349832 | | ||| | ||||||||||| ||||||||||| | | | | | | | || || Sbjct 5744 GGTATATGACCTTGGTGGTGGTACATTTGATGTATCTATCATTGAGA-TAGGCGATGGTG 5686 Query 349833 TTTTTGAAGTTAAAGCAACTGCTGGTGATACACA-TCTTGGTGGAGAAGATTTTGAT 349888 || | |||||| || ||||| ||| ||| ||| |||||||| || ||||| ||| Sbjct 5685 TTATCGAAGTTCTTGCTACTGCAGGTAATA-ACAGACTTGGTGGTGATGATTTCGAT 5630 >seq3881 Length=49372 Score = 122 bits (134), Expect = 3e-22 Identities = 206/296 (70%), Gaps = 8/296 (3%) Strand=Plus/Minus Query 349594 TGAAACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTC 349653 ||||| || || || || |||||||| ||||| || || ||||| ||||| |||||| Sbjct 6630 TGAAAAGGTTACAGAAGCAGTTATTACGGTACCGGCTTACTTTAACGATGCTCAGCGTCA 6571 Query 349654 TGCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACC 349713 || ||||| ||||| || | || || || | |||| | || || ||||| || Sbjct 6570 GGCTACAAAGGATGCAGGTAAAATCGCAGGTCTTGATGTAAAGCGTATCATCAATGAGCC 6511 Query 349714 CACTGCTGCAGCAATTGCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCT 349773 || |||||||| |||||||||| |||||||| ||| || || | || ||| | Sbjct 6510 TACAGCTGCAGCCCTTGCATATGGTCTTGATAA------TGAGCAGGAGCAGAAGATTAT 6457 Query 349774 TATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAAT 349833 ||| ||| | ||||||||||| ||||||||||| | | ||| || || | Sbjct 6456 GGTTTATGACCTTGGTGGTGGTACATTTGATGTATCTATCATCGAGATTGGTGATGGTGT 6397 Query 349834 TTTTGAAGTTAAAGCAACTGCTGGTGATACACA-TCTTGGTGGAGAAGATTTTGAT 349888 | | || ||| || || |||||| ||| ||| |||||||| || ||||| ||| Sbjct 6396 TATCGAGGTTCTTGCTACAGCTGGTAATA-ACAGACTTGGTGGTGATGATTTCGAT 6342 >seq4549 Length=53065 Score = 120 bits (132), Expect = 9e-22 Identities = 217/315 (69%), Gaps = 8/315 (3%) Strand=Plus/Plus Query 349577 GCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTTT 349636 || || || ||||| || ||||| |||||| | || ||||| ||||| || || || ||| Sbjct 44608 GCAGAGGCTTATTTGGGCGAAACTGTAACTCAAGCGGTTATCACTGTTCCGGCTTACTTT 44667 Query 349637 AATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTA 349696 ||||| || ||| ||||||||||| || |||| ||||| ||| | | ||| | Sbjct 44668 AATGACAGTCAACGTCAAGCAACAAAAGACGCGGGCAAAATTGCAGGGCTTGAAGTTTTG 44727 Query 349697 AGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGCTTGATAAAATGAGTGAC 349756 ||||| || || ||||| || || || || |||| || || | |||||| ||| Sbjct 44728 AGAATTATCAACGAACCGACGGCGGCTGCGCTTGCTTACGGCTTAGATAAA------GAC 44781 Query 349757 CAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTA 349816 || ||| ||| | ||||||| || || || |||||||| || || ||| | | Sbjct 44782 AGCGATGAAACAATTTTAGTTTTTGACTTGGGCGGCGGTACTTTCGACGTTTCAAT-TTT 44840 Query 349817 ACACTTGA-AGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGG 349875 | |||| || |||| ||| || || | ||||| || ||||||||| | || || Sbjct 44841 GGAATTGACTGAAGGAACTTTCGACGTACAGGCAACAAACGGCGATACACATTTGGGCGG 44900 Query 349876 AGAAGATTTTGATAA 349890 || || || ||||| Sbjct 44901 CGACGACTTCGATAA 44915 >seq145 Length=97958 Score = 113 bits (124), Expect = 1e-19 Identities = 398/614 (65%), Gaps = 32/614 (5%) Strand=Plus/Minus Query 349281 AAGGTAACAGAACAACGCCATCATACGTTGCATTTACCGAAACTGAGCGTATGATTGGTG 349340 ||||| |||||||| || ||| || ||||| || |||| |||||| | | || Sbjct 34623 AAGGTGCAAGAACAACACCTTCAATGGTGGCATTCACGGAAAATGAGCGCCTTGTCGGCT 34564 Query 349341 ATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAATACGGTTTTTGATGCTAAGCGAC 349400 || | ||||||| ||||||| | | ||||| ||||||| | |||| ||||| Sbjct 34563 ATCCGGCAAAAAGACAAGCTGTTACAAATCCGGAAAATACATTGTTTGCCATCAAGCGTT 34504 Query 349401 TTATTGGTAGAAGTTTTTCT--GACAAATCTACACAATCTGATCTAA--AACATTTTCCT 349456 | |||||| | | | | | | || | | | || || ||| |||||| ||| Sbjct 34503 TAATTGGTCGCCGCTATGATTCGGCAGAAGTTGAAAA----ATTTAAGGAACATTCTCCG 34448 Query 349457 TTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTATTGA--GGTTGAATATAAAGGTG 349514 || | ||||| | ||||||||| | | || | ||||||| ||||| | Sbjct 34447 TTCAAAATTGTTGC------CGGTGATAA--CGGTGATGCATGGGTTGAAGCAAAAGGAG 34396 Query 349515 AACAAAAACAATTTTTACCCGAAGAAATTTCATCAATGGTTTTAGTTAAAATGAAGGAAA 349574 || || ||| || | |||||||| |||| ||||| ||||| || ||| Sbjct 34395 AAAAA------TTTGCTCCGTCACAAATTTCAGCAATTGTTTTGCAAAAAATTAAAGAAT 34342 Query 349575 TTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATTACTGTACCAGCCTATT 349634 ||| ||| || | || |||| | | | | || || ||||| || || || |||| Sbjct 34341 ATGCCGAAAGTTACCTGGGCGAAAAAATCGATAAAGCCGTAATTACGGTTCCGGCATATT 34282 Query 349635 TTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTC 349694 | |||||| | || ||| |||||||||||||| || | |||||||| || | ||| Sbjct 34281 TCAATGATTCACAACGTCAGGCAACAAAAGATGCCGGAAAAATTGCGGGTTTGGAAGTTT 34222 Query 349695 TAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGCTTGATAAAATGAGTG 349754 | | || || || || || || ||||| ||| |||| ||||| | ||||||| | Sbjct 34221 TGCGTATCATAAACGAGCCGACAGCTGCCGCACTTGCTTATGGTATGGATAAAA-ACGCC 34163 Query 349755 ACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTAC 349814 ||| | | || || | | ||| || || |||||||| || ||||| || | Sbjct 34162 ACCGGCACA-----ATCGTTGTATATGACTTGGGCGGTGGTACATTCGATGTTTCCATTT 34108 Query 349815 TAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTT-GGT 349873 | | | | || || | |||||||||||||| || |||||||| |||| || Sbjct 34107 TGGAAATCGGTGATGGTGTATTTGAAGTTAAAGCCACCAACGGTGATAC-TTTCTTGGGC 34049 Query 349874 GGAGAAGATTTTGA 349887 || |||||||| || Sbjct 34048 GGTGAAGATTTCGA 34035 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515155407009497