Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alces_20americanus_20[genbank_20GCA_5F900089705.1_202017-06-20] 5,099 sequences; 74,234,735 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq3176 159 4e-34 seq3781 123 3e-23 seq4039 107 2e-18 seq694 107 2e-18 >seq3176 Length=15124 Score = 159 bits (176), Expect = 4e-34 Identities = 266/382 (70%), Gaps = 7/382 (2%) Strand=Plus/Plus Query 158965 TCTCCAGTCGCAATCACAAAGTCCTCTGGACCGGGCTGTTGGAGCATGAGCCACATGGCC 159024 || ||||| ||||| ||||| || || || | ||||| || || || ||||||||| | Sbjct 1578 TCACCAGTAGCAATGACAAAATCGTCAGGTTCAGGCTGCTGCAGGATAAGCCACATGCAC 1637 Query 159025 TCGACGTAATCCTGCGCGTGACCCCAGTCGCGCTTGGCATCCATGTTCCCGAGCTCGATG 159084 || |||||||| | || | ||||||||||| ||||| | ||| ||||| | || Sbjct 1638 TCCACGTAATCTTTTGCATAGCCCCAGTCGCGTAGGGCATTGAGGTTGCCGAGATAGAG- 1696 Query 159085 ACTTTTCCAGA----CTTTTTCCACTCAGCCAGAC-CGAGCGTGATCTTGCGCGTCACAA 159139 ||| ||| || ||| | | | | ||| | | |||||| || || || |||| Sbjct 1697 -CTTGTCCTGATAACCTTGGGCTATGCGGGCAGCTGCCAACGTGATTTTACGAGTGACAA 1755 Query 159140 ACTCTGCTCCGCGCCGTTCCGACTCATGGTTAAACAGAATGCCGGTACAAGCGAACAGGT 159199 | | | || |||||||| ||||||||| |||| ||||||| | || ||||| || Sbjct 1756 AGGTTTCCCCTCGCCGTTCGCTCTCATGGTTGAACAAAATGCCGTTGCAGCAGAACATGT 1815 Query 159200 TATAGGACTCGCGGTAATTTTTAGTTATCCAGTATCCAAAGAGCTTGGAGACGCCGTATG 159259 |||||| || ||||| || || | |||||| ||||| ||||||| | |||||||| | Sbjct 1816 CATAGGATTCACGGTAGTTCTTCATAATCCAGAATCCATAGAGCTTTGCAACGCCGTAGG 1875 Query 159260 GACTCCGAGGATAAAATGGTGTCCCCTCATTTTGAATTGGTTCCTGAACCTTTCCAAACA 159319 | || |||||||||||||| || | ||| |||||| ||| |||||||| Sbjct 1876 GTGAACGTGGATAAAATGGTGTTGTTTCGCTCTGAGGAACTTCCTGTACCAGTCCAAACA 1935 Query 159320 TTTCACTCGTCCCAGCCTGATA 159341 || || || |||||||| Sbjct 1936 ACTCGCTGGTTGAGGCCTGATA 1957 >seq3781 Length=31116 Score = 123 bits (136), Expect = 3e-23 Identities = 238/345 (69%), Gaps = 11/345 (3%) Strand=Plus/Plus Query 124494 AACTCACGGATGCTGTGCGTCTCACCCGTGCCAATCACGAAATCTTCGGGAATCGACTGC 124553 ||||| || | |||||| || || ||| | || ||||| |||||||| | |||| Sbjct 17025 AACTCGCGCACGCTGTGGTATTCGCCTGTGGCTATGACGAAGTCTTCGGGCTGCTCCTGC 17084 Query 124554 TGCAACATAAGCCACATGGCTTGGACGTAGTCCTCTGCGTGCCCCCAGTCGCGCTTGGCA 124613 || | || ||||||||| | |||||| |||| |||| |||||||||||| || Sbjct 17085 TGTAGAATGAGCCACATGCACTCGACGTAATCCTTGGCGTAGCCCCAGTCGCGCAGCGCG 17144 Query 124614 TCCAGGTTTCCGAGCTCGA--TTGGCTTGGCCGTCTTGTTCCACTCCGCCAAACCC-AGT 124670 | ||||| ||||| | || ||| | ||| | | || | | | | | | || Sbjct 17145 TTGAGGTTGCCGAGGTAGAGCTTGTCCTGGAAGCCCTGAGCTATGCGAGCGGCCGCGAGG 17204 Query 124671 GTAATCTTGCGCGTCACAAAC---TCGGAACCGCGTCGCTCAGACTCGTGGTTGAACAGA 124727 || ||||| || || || ||| ||| ||||| || || |||||||||||| || Sbjct 17205 GTTATCTTACGTGTGACGAACGTCTCG---CCGCGCCGTTCGCTCTCGTGGTTGAAGAGG 17261 Query 124728 ATGCCAGTACACGCA-AACATCCCGTACGACTCGCGGTAGTTTTTCGTCATCCAATACCC 124786 ||||| | || ||| |||| || || |||||||||||| ||| | |||||| | || Sbjct 17262 ATGCCGTTGCA-GCAGTACATACCATAGCTCTCGCGGTAGTTCTTCATAATCCAAAAACC 17320 Query 124787 AAAGAGCTTGGACACGCCATAGGGGCTTCGGGGGTAGAATGGGGT 124831 | ||||||||| ||||| ||||| || |||||||| || || Sbjct 17321 ATAGAGCTTGGCGACGCCGTAGGGCGAACGCGGGTAGAAAGGCGT 17365 >seq4039 Length=95413 Score = 107 bits (118), Expect = 2e-18 Identities = 222/324 (69%), Gaps = 11/324 (3%) Strand=Plus/Plus Query 124515 TCACCCGTGCCAATCACGAAATCTTCGGGAATCGACTGCTGCAACATAAGCCACATGGCT 124574 ||||| || | || |||||||| ||||| || |||||| | || ||||||||| | Sbjct 43214 TCACCTGTTGCGATGACGAAATCGTCGGGCTCCGGCTGCTGGAGGATCAGCCACATGCAT 43273 Query 124575 TGGACGTAGTCCTCTGCGTGCCCCCAGTCGCGCTTGGCATCCAGGTTTCCGAGCTCGA-- 124632 | || ||||| | || | ||||||||||||| | | |||||| || | | || Sbjct 43274 TCGATATAGTCTTTGGCATACCCCCAGTCGCGCAATGAGTTCAGGTTACCCAAATAGAGT 43333 Query 124633 TTGGCTTGGCCGTCTTGTTCCACTCC-GCCAAACCCAGTGTAATCTTGCGCGTCACAAA- 124690 ||| | || | ||| | | | || ||| |||||||||||| || || || Sbjct 43334 TTGTCCTGAAAACCCTGTGCAATACGTGCGGCTGCCAATGTAATCTTGCGGGTTACGAAG 43393 Query 124691 --CTCGGAACCGCGTCGCTCAGACTCGTGGTTGAACAGAATGCCAGTACACGCA-AACAT 124747 ||| |||||| |||||| |||||| ||||| || || || | || ||| ||||| Sbjct 43394 GTCTC---ACCGCGACGCTCACTCTCGTGATTGAAGAGGATACCGTTGCA-GCAGAACAT 43449 Query 124748 CCCGTACGACTCGCGGTAGTTTTTCGTCATCCAATACCCAAAGAGCTTGGACACGCCATA 124807 ||| ||||| || ||||| ||| | ||||| | || |||| |||| |||| |||| Sbjct 43450 ATTGTAGGACTCACGATAGTTCTTCATGATCCAGAAACCGTAGAGTTTGGCCACGGCATA 43509 Query 124808 GGGGCTTCGGGGGTAGAATGGGGT 124831 || ||||| ||||| ||||| Sbjct 43510 AGGAGAACGGGGATAGAACGGGGT 43533 >seq694 Length=3148 Score = 107 bits (118), Expect = 2e-18 Identities = 234/343 (68%), Gaps = 7/343 (2%) Strand=Plus/Minus Query 124494 AACTCACGGATGCTGTGCGTCTCACCCGTGCCAATCACGAAATCTTCGGGAATCGACTGC 124553 ||||| | || ||||||| | | || ||| | || ||||| |||||||| || | Sbjct 1909 AACTCCCTGACGCTGTGCTGCACGCCGGTGGCGATGACGAAGTCTTCGGGTTTCTTGTTT 1850 Query 124554 TGCAACATAAGCCACATGGCTTGGACGTAGTCCTCTGCGTGCCCCCAGTCGCGCTTGGCA 124613 |||| || |||||||| | |||||||||| |||| |||||||| ||| ||| Sbjct 1849 TGCAGGATGAGCCACATACACTCCACGTAGTCCTTGGCGTAGCCCCAGTCACGCA-GGCT 1791 Query 124614 TCC-AGGTTTCCGAGCTCGATTGG--CTTGGCCGTCTTGTTCCACTCCGCCAA-ACCCAG 124669 | ||||||||||| | || | |||| | ||||| | | | || | |||| Sbjct 1790 GCTGAGGTTTCCGAGGTAGAGGCGGTCTTGCTTGCCTTGTGCTATGCGTGCAGCAGCCAG 1731 Query 124670 TGTAATCTTGCGCGTCACAAACTCGGAACCGCGTCGCTCAGACTCGTGGTTGAACAGAAT 124729 ||| || ||||| || ||||| || ||||| ||| |||||||||||| || || Sbjct 1730 TGTTATTTTGCGTGTGACAAAAGTTTCTCCCCGTCGTTCACTCTCGTGGTTGAAGAGTAT 1671 Query 124730 GCCAGTACACGCA-AACATCCCGTACGACTCGCGGTAGTTTTTCGTCATCCAATACCCAA 124788 ||| | || ||| ||||| ||| | ||||| || | ||| ||||| || || Sbjct 1670 GCCGCTGCA-GCAGAACATGTTGTAGGCTTCGCGATACTCCTTCACTATCCAGTAGCCGT 1612 Query 124789 AGAGCTTGGACACGCCATAGGGGCTTCGGGGGTAGAATGGGGT 124831 |||| |||| |||| |||| ||||| ||||| ||| || || Sbjct 1611 AGAGTTTGGCCACGGCATAAGGGCTGTAGGGGTGGAAAGGTGT 1569 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547181121820200