Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alces_20americanus_20[genbank_20GCA_5F900089705.1_202017-06-20] 5,099 sequences; 74,234,735 total letters Query= NC_028448.1 Length=167467 Score E Sequences producing significant alignments: (Bits) Value seq2964 125 8e-24 seq2701 93.3 5e-14 >seq2964 Length=2227 Score = 125 bits (138), Expect = 8e-24 Identities = 616/959 (64%), Gaps = 36/959 (4%) Strand=Plus/Plus Query 151575 GCGATGCGAGGAAGATTCAGTGTTACAACACCAAGATTATTACGTCCATCAAGAATTTCA 151634 ||||| ||||| |||||||| |||| ||||| ||||| ||||| || || | || | | Sbjct 951 GCGATACGAGGCAGATTCAGACTTACCACACCCAGATTGTTACGGCCGTCGTGGATCTGA 1010 Query 151635 TTACCAGTCGAATCTTTCCATACGCT-CAAGAAACTA-CGGCATCCCATCGGAGAAACAG 151692 ||| || || | |||||| | || || | ||||| |||||||||| | Sbjct 1011 ACACCGTTC---TCCT--CATACGGGGCGAGGAATGAGCGGCAGCCCATCGGAGT--CTT 1063 Query 151693 GAACAGATGAACCAGTGATAGCTTTAT----TGTTCTTGGCTGAAATAATATCAGGATAC 151748 ||| |||||| || | ||| | || || | | | | | ||||| |||||| Sbjct 1064 GAA----TGAACCGGTAAC--CTTCACAACCTGATCGTAGTTCAGA--ATATCCGGATAC 1115 Query 151749 ATCCTTTTGCTTGCGCACTCTAGAGCAAGCTGCTTAATATCATAGTTCGGATCGTCTTTG 151808 || || ||| ||||| || ||||| |||| ||| ||||| ||||| ||||| | | Sbjct 1116 ATTCTCTTGGAGGCGCATTCAAGAGCCAGCTTCTTGATATCGTAGTTAGGATCACCCTCT 1175 Query 151809 TAAAGATTAACGCCTTCTTCGACGAACATAACAAGCTTAGGGAAAATAGGAGTTATCCCA 151868 | | | || | || || | || | | || ||||||||||||| | |||| | | Sbjct 1176 TTACGGTTCAGTCCCTCCTTGATGGCAAACACCAGCTTAGGGAAAACCGCAGTTCTGTGA 1235 Query 151869 TCACGACCAAGACCTTTAATACGATTTTTCAGAATTGCTTTCTGAATCATTCGTTCAGTC 151928 | || || ||||| ||| | || |||||||| | ||||| |||| ||| | Sbjct 1236 TTGCGGCCGAGACCAGCAATTCTGTTCTTCAGAATAGACTTCTGGATCAGACGTGACTCC 1295 Query 151929 CAGTCAGTTCCCGTACCAAATGTAATTGTTACAAAAGGTGTTTGCCCGTTTGAACTAAAG 151988 ||| |||||| ||| || | ||||| || || || || ||||| || || Sbjct 1296 CAGGATGTTCCCAGACCGAAACCGAGAGTTACGAACGGAGTCTGACCGTTGGAGGTATGC 1355 Query 151989 AGAGTATTTACTTCATATTCATAAGCTTGGAATGCATCGTATACGTCTTTTTCTGTTTTA 152048 || || ||||||||||||||| || ||||| || || || || ||||| || Sbjct 1356 AGGGTGTTTACTTCATATTCAAGAGACTGGAAGGCGTCATAGCACTCCTTTTCAGTACGG 1415 Query 152049 GATTGAGCATAATTCAACGCATCAGCGATTTGCCATTTTTCTG-CATCCTC-AATATGTT 152106 | | | ||| | | || ||||| || ||||| | || | |||| || ||| | Sbjct 1416 GCTCGGGCAAAGCTGTCCGGATCAGGAATGTGCCACTCCTCGGCCATCTTCTGATACTTC 1475 Query 152107 TTGCATATGTGCGTTTAACATAAGGAGAAAGTACTTTATCTACATTCG-CAAAAGTCGTT 152165 || | | | | ||||||| || | ||| || | ||| ||| | | || || Sbjct 1476 ATGAAACTCTTGG--TAACATACGGGGCAAGCACCTCATC-ACAGCGGTTGATGGTTGTA 1532 Query 152166 CCGCCATATTGATGGGAAGCAACCTGTGCAGTAATTTGTGCCATAATTGCAGTAGCAACG 152225 ||||| || |||| |||||||| || | || ||||| ||| || || || Sbjct 1533 CCGCCGTAGATATGGCTGGCAACCTGGGCGATGATCTGTGCGGTAACCGCGGTTGCGGTA 1592 Query 152226 CCAATTGATTTAGGAGTTTCAATCTGTGCATTACCAAGCTTAAATCCGTTCTCAAGCATT 152285 | ||||| ||||| | ||| || | |||||||| | ||| || ||| || |||||| Sbjct 1593 CTGATTGACTTAGGTGATTCGATTTCGGCATTACCCATCTTGAAACCGCGTTCCAGCATT 1652 Query 152286 CCTTTTAAATCTACTAAACAGCAATTAGTAAAT--GGAAGAGCAGGGGAATAATCAATAT 152343 || | ||| | | | || | | | | || |||||| | || ||||| || | || Sbjct 1653 CCGCCGACATCGA-TCAGCATACAGTTGAACATCGGGAAGAAC-GGTGAATAGTCGAGAT 1710 Query 152344 CATGGAAATGAATAATTCCGCTTTCATGCGCTTTCATAA-TAAAAGACGGGACCAT---A 152399 | || ||||| || || |||||||| ||| ||| || | || || | ||| Sbjct 1711 CGTGAAAATGGATCTCCCCTCTTTCATGGGCTCTCACAACTTCCTGA-GGAAGCATGTGC 1769 Query 152400 TTTTTGGCAATGTGTTTAGACACAATACCAGCCATAAGGTCCCGTTGAGTTGGAAAAACA 152459 | ||| ||| ||| | |||||||| || | |||||| || || || |||| ||| Sbjct 1770 TGTTTTGCATAGTGGCGTGCAACAATACCTGCAAGAAGGTCACGCTGGGTCGGAATAACC 1829 Query 152460 CGAGAATCTTTATTAGCATTCTCGTTCAAAAGGTCTTTATTAGTTTTATGAATCAATCC 152518 || || || ||||||||||| | || ||| ||| | | || |||| ||| Sbjct 1830 TTGCTGTCCTTGTTGGCATTCTCGTTAAGCAGATCTGCATTTGACTGATCGATCAGTCC 1888 >seq2701 Length=6067 Score = 93.3 bits (102), Expect = 5e-14 Identities = 131/184 (71%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 3805 ATTACAAACTCTCAGTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAG 3864 |||||| ||| ||| || || | | | ||| || |||||||||| || | || Sbjct 5367 ATTACAGCTTCTGAGTGAAAGTTCTTGTTACAACATCCTGCTGCTGTTCTTTGGTTAAAG 5308 Query 3865 AGTTAAAGCGAACTGCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGAT 3924 |||| || || || |||||||| || |||||||| ||||| ||||||||||| || | Sbjct 5307 AGTTGAAACGTACAGCATAACCTGAAACACGGATTGTCAGTGTAGGATATTTTTCAGGGT 5248 Query 3925 GCTTAACTGCATCTTCCAGAGTTTCACGACGCAGAACGTTAACGTTCAGGTGTTGACCAC 3984 | | | |||||| ||| ||||| | |||||||| || ||||| || ||||| | Sbjct 5247 GTTCCATTGCATCGAGCAGTGTTTCTCTGTTGAGAACGTTCACATTCAGATGCTGACCGC 5188 Query 3985 CTTC 3988 |||| Sbjct 5187 CTTC 5184 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 535732251589080