Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alces_20americanus_20[genbank_20GCA_5F900089705.1_202017-06-20] 5,099 sequences; 74,234,735 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq4688 114 1e-20 seq4293 107 2e-18 seq2451 102 7e-17 seq127 100 2e-16 >seq4688 Length=13253 Score = 114 bits (126), Expect = 1e-20 Identities = 194/281 (69%), Gaps = 0/281 (0%) Strand=Plus/Minus Query 29894 AGGTAGACGTGAGCGTCTCCCAGGTTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACG 29953 ||||||| ||| | ||| || | | |||||| ||||| || || | || || ||||| Sbjct 3973 AGGTAGATGTGGGTGTCGCCGAAGGAGTGGACGAACTCGCCGGGCTGCAGGCCCGTGACC 3914 Query 29954 TGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCC 30013 || || ||||| |||||||| | ||| ||||||||| ||||| || ||||| Sbjct 3913 TGTGCGATCATCATGGTGAGGAGGGCATAGGAGGCGATGTTGAAGGGCACTCCGAGGAAG 3854 Query 30014 ATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAACTGA 30073 | ||| | | |||||||||||| || || |||||| ||||| ||||| Sbjct 3853 ACGTCGGCGCTGCGCTGGTAGAGCTGGCAGCTCAGGCGGCCGTCGGCTACGTAGAACTGG 3794 Query 30074 CACATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCAC 30133 ||| | |||||| || || || ||||| | | | ||| |||||||||||||| Sbjct 3793 AACAGGCAGTGGCAGGGCGGGAGGGCCATCTTGTCGATGTCGGCCGGGTTCCAGGCGCAG 3734 Query 30134 ACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTC 30174 |||| |||||| | | || ||||||| | |||||||| Sbjct 3733 ACGAGGATGCGGCGGGAGTCGGGGTTGTGCTCAATGAGGTC 3693 >seq4293 Length=67978 Score = 107 bits (118), Expect = 2e-18 Identities = 205/302 (68%), Gaps = 0/302 (0%) Strand=Plus/Plus Query 29894 AGGTAGACGTGAGCGTCTCCCAGGTTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACG 29953 ||||||| ||| | ||| ||| | |||||| || || ||||| | |||||| | Sbjct 67219 AGGTAGATGTGGGTGTCGCCCGTGGTGTGGATGAATTCGCCCGGAGCCAGCCCGCACTCC 67278 Query 29954 TGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCC 30013 || || ||||| ||||| || |||||| ||||||||| ||||| || || || Sbjct 67279 TGTGCTATCATCATGGTGAGCAGCGAGTAGGAGGCGATGTTGAAGGGCACGCCCAGGAAG 67338 Query 30014 ATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAACTGA 30073 ||||| | | |||||||||||| || ||| ||||| ||| || ||||| Sbjct 67339 GTGTCCGCGCTGCGCTGGTAGAGCTGGCAGCTGAGGCGGCCGTCCGCCACATAGAACTGG 67398 Query 30074 CACATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCAC 30133 | | | ||||||||| ||||| ||||| | | ||| || ||||||||| ||| | Sbjct 67399 AAGAGGCAGTGGCACGGGGGAAGCGCCATCATGTCCACCTCGCCGGGGTTCCATGCGGAT 67458 Query 30134 ACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGA 30193 ||||||| ||| | | || || ||| | | || |||| | | | || | |||||| Sbjct 67459 ACGATGAGGCGGCGGCTGTCCGGATTGCTTTTTATCTGGTCGATGACATTCTTCAGCTGG 67518 Query 30194 TC 30195 || Sbjct 67519 TC 67520 >seq2451 Length=31860 Score = 102 bits (112), Expect = 7e-17 Identities = 163/234 (70%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 29896 GTAGACGTGAGCGTCTCCCAGGTTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTG 29955 ||| | ||| | |||||| |||| || |||||||| || | || |||||||| || Sbjct 18280 GTACAGGTGCGTATCTCCCGTCGTGTGCACGAACTCTCCGGGCTGCAGGCCGGTGACCTG 18339 Query 29956 AGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCAT 30015 ||||||||| ||| || || | |||| ||| ||||| ||||| || || || || Sbjct 18340 GGCCATCATGAGCGTAAGCAGCGCGTAGGAGGCTATGTTGAAGGGAACGCCCAGGAACAC 18399 Query 30016 GTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAACTGACA 30075 ||| | | ||| || ||||| || || || | |||| || |||||| ||||| | Sbjct 18400 GTCGGCGCTGCGCTGATACAGCTGGCAGGACAGTTTTCCGCCGGCCACGTAGAACTGGAA 18459 Query 30076 CATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGC 30129 || | |||||| || || || ||||| || ||| || ||||||||||| Sbjct 18460 CAGGCAGTGGCAGGGGGGCAGGGCCATCTGGTCCACCTCGGCCGGGTTCCAGGC 18513 >seq127 Length=36082 Score = 100 bits (110), Expect = 2e-16 Identities = 156/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 29880 GTTCCACGTTATCCAGGTAGACGTGAGCGTCTCCCAGGTTGTGGACAAACTCTCCCGGTT 29939 |||||| || | |||||||| ||| | ||| || | | |||| ||||| ||||||| Sbjct 865 GTTCCAAGTGGTTCAGGTAGAGGTGTGTGTCGCCGGTGGTATGGATGAACTCACCCGGTT 924 Query 29940 CTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGG 29999 || || || || |||||||||||| | || || | || ||| ||||| |||| Sbjct 925 TCAGTCCCGTCACCTGAGCCATCATGAGCAGCAGCAGGGCATACGAGGCAATGTTGAAGG 984 Query 30000 GTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGC 30059 | || ||||| | || |||| | |||||||||||| ||| || || |||| | Sbjct 985 GAACGCCGAGGAAGGTATCGGCCGAACGCTGGTAGAGCTGCAGCGAAAGTTCACCGTTGG 1044 Query 30060 TCACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCAT 30102 || || ||||| |||||| ||||| || ||||| ||||| Sbjct 1045 CAACATAGAACTGGAACATGGTATGGCAGGGCGGAAGCGCCAT 1087 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406285150221108