Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alces_20americanus_20[genbank_20GCA_5F900089705.1_202017-06-20] 5,099 sequences; 74,234,735 total letters Query= NC_028778.1 Length=75626 Score E Sequences producing significant alignments: (Bits) Value seq210 89.7 2e-13 seq4876 82.4 4e-11 seq2444 82.4 4e-11 >seq210 Length=13889 Score = 89.7 bits (98), Expect = 2e-13 Identities = 58/64 (91%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 65534 CGCCGGGGGATCGAACCCCGGACCCGCTGATTAAAAGTCAGCTGCTCTACCAACTGAGCT 65593 |||| |||| |||||||| |||||| |||||||| |||||| |||||||||||||||||| Sbjct 7985 CGCCAGGGGGTCGAACCCTGGACCCACTGATTAAGAGTCAGTTGCTCTACCAACTGAGCT 7926 Query 65594 AGCG 65597 |||| Sbjct 7925 AGCG 7922 Score = 89.7 bits (98), Expect = 2e-13 Identities = 58/64 (91%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 65534 CGCCGGGGGATCGAACCCCGGACCCGCTGATTAAAAGTCAGCTGCTCTACCAACTGAGCT 65593 |||| |||| |||||||| |||||| |||||||| |||||| |||||||||||||||||| Sbjct 8088 CGCCAGGGGGTCGAACCCTGGACCCACTGATTAAGAGTCAGTTGCTCTACCAACTGAGCT 8029 Query 65594 AGCG 65597 |||| Sbjct 8028 AGCG 8025 >seq4876 Length=17990 Score = 82.4 bits (90), Expect = 4e-11 Identities = 54/60 (90%), Gaps = 0/60 (0%) Strand=Plus/Minus Query 65536 CCGGGGGATCGAACCCCGGACCCGCTGATTAAAAGTCAGCTGCTCTACCAACTGAGCTAG 65595 ||||||| ||||||||||||||| | |||||| |||| | |||||||||||||||||||| Sbjct 6895 CCGGGGGCTCGAACCCCGGACCCACAGATTAAGAGTCTGTTGCTCTACCAACTGAGCTAG 6836 >seq2444 Length=44322 Score = 82.4 bits (90), Expect = 4e-11 Identities = 67/80 (84%), Gaps = 1/80 (1%) Strand=Plus/Minus Query 62787 GGCTAAGCCACCTTAGCTCAG-CGGTAGAGCAGCGCCTTCGTAACGCGCAGGTCAACGGT 62845 ||| ||||||| ||||||||| |||||||||||||| ||||||||||||||||| | || Sbjct 16409 GGCCAAGCCACTTTAGCTCAGTCGGTAGAGCAGCGCATTCGTAACGCGCAGGTCGTCAGT 16350 Query 62846 TCGATTCCGTTAGGTGGCTC 62865 |||| | | | ||||||| Sbjct 16349 TCGAGCCTGATGAGTGGCTC 16330 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 241863368693593