Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alces_20americanus_20[genbank_20GCA_5F900089705.1_202017-06-20] 5,099 sequences; 74,234,735 total letters Query= NC_028780.1 Length=167124 Score E Sequences producing significant alignments: (Bits) Value seq2964 125 8e-24 seq2701 89.7 5e-13 >seq2964 Length=2227 Score = 125 bits (138), Expect = 8e-24 Identities = 511/792 (65%), Gaps = 15/792 (2%) Strand=Plus/Minus Query 120025 GGATTGATTCATAAAACTAATAAAGACCTTTTAAACGAGAATGCTAATAAAGATTCTCGT 120084 ||| |||| || | | ||| ||| || | ||||||||||| || || || Sbjct 1888 GGACTGATCGATCAGTCAAATGCAGATCTGCTTAACGAGAATGCCAACAAGGACAGCAAG 1829 Query 120085 GTTTTTCCAACTCAACGGGACCTTATGGCTGGTATTGTGTCTAAACACATTGCCAAAAAT 120144 ||| |||| || || || |||||| | || |||||||| | ||| ||| ||| | Sbjct 1828 GTTATTCCGACCCAGCGTGACCTTCTTGCAGGTATTGTTGCACGCCACTATGCAAAACAG 1769 Query 120145 ---ATGGTCCCGTCTTTTA-TTATGAAAGCGCATGAAAGCGGAATTATCCATTTCCACGA 120200 ||| | || || | || ||| ||| |||||||| || |||||||| ||||| Sbjct 1768 CACATGCTTCC-TCAGGAAGTTGTGAGAGCCCATGAAAGAGGGGAGATCCATTTTCACGA 1710 Query 120201 TATTGATTATTCCCCTGCTCTTCC--ATTTACTAATTGCTGTTTAGTAGATTTAAAAGGA 120258 | | || ||||| || | |||||| || | | | | || | | | ||| | ||| Sbjct 1709 TCTCGACTATTCACC-GTTCTTCCCGATGTTCAACTGTATGCTGA-TCGATGTCGGCGGA 1652 Query 120259 ATGCTTGAAAACGGATTTAAGCTAGGTAATGCACAGATTGAAACTCCTAAATCAATTGGC 120318 ||||| ||| ||| || ||| | |||||||| | || ||| | ||||| ||||| | Sbjct 1651 ATGCTGGAACGCGGTTTCAAGATGGGTAATGCCGAAATCGAATCACCTAAGTCAATCAGT 1592 Query 120319 GTTGCTACTGCAATTATGGCACAAATTACTGCACAGGTTGCTTCTCACCAATACGGCGGA 120378 || || || ||| ||||| || | || |||||||| || |||||||| Sbjct 1591 ACCGCAACCGCGGTTACCGCACAGATCATCGCCCAGGTTGCCAGCCATATCTACGGCGGT 1532 Query 120379 ACGACTTTTG-CGAATGTAGATAAAGTACTTTCTCCTTATGTTAAACGCACCTATGCAAA 120437 || || | | ||| ||| | || ||| | || ||||||| | | | || Sbjct 1531 ACAACCATCAACCGCTGT-GATGAGGTGCTTGCCCCGTATGTTA--CCAAGAGTTTCATG 1475 Query 120438 ACATATT-GAGGATG-CAGAAAAATGGCAAATCGCCGATGCGTTGAATTATGCTCAATCT 120495 | ||| || |||| | || | ||||| || | ||| || | | ||| | | | Sbjct 1474 AAGTATCAGAAGATGGCCGAGGAGTGGCACATTCCTGATCCGGACAGCTTTGCCCGAGCC 1415 Query 120496 AAAACAGAAAAAGACGTATACGATGCATTCCAAGCTTATGAATATGAAGTAAATACTCTC 120555 || ||||| || || || || ||||| || ||||||||||||||| || || Sbjct 1414 CGTACTGAAAAGGAGTGCTATGACGCCTTCCAGTCTCTTGAATATGAAGTAAACACCCTG 1355 Query 120556 TTTAGTTCAAACGGACAGACTCCTTTTGTAACAATTACATTTGGTACGGGAACTGACTGG 120615 || || ||||| |||||||| || ||||| | || ||| |||||| |||| Sbjct 1354 CATACCTCCAACGGTCAGACTCCGTTCGTAACTCTCGGTTTCGGTCTGGGAACATCCTGG 1295 Query 120616 ACTGAACGAATGATTCAGAAAGCAATTCTGAAAAATCGTATTAAAGGTCTTGGTCGTGAT 120675 ||| |||| ||||| | |||||||| || | ||| ||||| || || || Sbjct 1294 GAGTCACGTCTGATCCAGAAGTCTATTCTGAAGAACAGAATTGCTGGTCTCGGCCGCAAT 1235 Query 120676 GGGATAACTCCTATTTTCCCTAAGCTTGTTATGTTCGTTGAAGAAGGTGTTAATCTTTAT 120735 | |||| | ||||||||||||| || | | | | || || | || | | | Sbjct 1234 CACAGAACTGCGGTTTTCCCTAAGCTGGTGTTTGCCATCAAGGAGGGACTGAACCGTAAA 1175 Query 120736 AAAGACGATCCGAACTATGATATTAAGCAGCTTGCTCTAGAGTGCGCAAGCAAAAGGATG 120795 | | ||||| ||||| ||||| ||| |||| ||||| || ||||| ||| || ||| Sbjct 1174 GAGGGTGATCCTAACTACGATATCAAGAAGCTGGCTCTTGAATGCGCCTCCAAGAGAATG 1115 Query 120796 TATCCTGATATT 120807 ||||| |||||| Sbjct 1114 TATCCGGATATT 1103 >seq2701 Length=6067 Score = 89.7 bits (98), Expect = 5e-13 Identities = 130/184 (71%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 101919 GAAGGTGGTCAACACCTGAACGTTAACGTTTTGCGTCGTGAAACTCTGGAAGATGCAGTT 101978 ||||| ||||| || ||||| || |||||| | | ||||| ||| |||||| | Sbjct 5184 GAAGGCGGTCAGCATCTGAATGTGAACGTTCTCAACAGAGAAACACTGCTCGATGCAATG 5243 Query 101979 AAGCATCCGGAAAAATATCCGCAGCTGACCATCCGTGTATCCGGTTATGCAGTTCGCTTT 102038 | || || ||||||||||| ||||| |||||||| || |||||||| || || || Sbjct 5244 GAACACCCTGAAAAATATCCTACACTGACAATCCGTGTTTCAGGTTATGCTGTACGTTTC 5303 Query 102039 AACTCTCTGACTCCGGAACAGCAGCGCGACGTTATCGCTCGTACCTTCACCGAGAGTTTG 102098 |||||| | || |||||||||| || ||| | | | || ||||| ||| || Sbjct 5304 AACTCTTTAACCAAAGAACAGCAGCAGGATGTTGTAACAAGAACTTTCACTCAGAAGCTG 5363 Query 102099 TAAT 102102 |||| Sbjct 5364 TAAT 5367 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 534634721547360