Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alces_20americanus_20[genbank_20GCA_5F900089705.1_202017-06-20] 5,099 sequences; 74,234,735 total letters Query= NC_028890.1 Length=162486 Score E Sequences producing significant alignments: (Bits) Value seq3911 96.9 4e-15 seq1835 95.1 1e-14 seq2108 84.2 2e-11 seq153 84.2 2e-11 seq2250 82.4 8e-11 >seq3911 Length=21186 Score = 96.9 bits (106), Expect = 4e-15 Identities = 79/95 (83%), Gaps = 1/95 (1%) Strand=Plus/Minus Query 28374 GATAGCTCAGTTGGTAGAGCAGAGGGCTGAAAATCCTCGTGTCGTAGGTTCGATCCCTAC 28433 ||||||||||||||||||||||||| ||||||||||||||||||| |||||||| || || Sbjct 21181 GATAGCTCAGTTGGTAGAGCAGAGGACTGAAAATCCTCGTGTCGTTGGTTCGATTCCGAC 21122 Query 28434 TCCGTCCACCATATGCCTTTTATATTATGGTTGAT 28468 || | ||| || | || | |||||| ||| || Sbjct 21121 TCTGGGCACTAT-TTTTTTGTCTATTATAGTTTAT 21088 >seq1835 Length=5127 Score = 95.1 bits (104), Expect = 1e-14 Identities = 58/62 (94%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 28374 GATAGCTCAGTTGGTAGAGCAGAGGGCTGAAAATCCTCGTGTCGTAGGTTCGATCCCTAC 28433 ||||||||||||||||||||||||| ||||||||||||||||||| |||||||| || || Sbjct 4955 GATAGCTCAGTTGGTAGAGCAGAGGACTGAAAATCCTCGTGTCGTTGGTTCGATTCCGAC 4896 Query 28434 TC 28435 || Sbjct 4895 TC 4894 >seq2108 Length=14698 Score = 84.2 bits (92), Expect = 2e-11 Identities = 57/64 (89%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 28191 TGTAGCTCAGATTGGCTAGAGCGCTTGCTTTGGGAGCAAGAAGTCGCAGGTTCAAGTCCT 28250 |||| ||||| |||||||||| || ||||||||||||| || | |||||||||||||||| Sbjct 6416 TGTAACTCAGTTTGGCTAGAGTGCCTGCTTTGGGAGCAGGATGCCGCAGGTTCAAGTCCT 6475 Query 28251 GTCA 28254 |||| Sbjct 6476 GTCA 6479 >seq153 Length=48176 Score = 84.2 bits (92), Expect = 2e-11 Identities = 60/69 (87%), Gaps = 0/69 (0%) Strand=Plus/Plus Query 28376 TAGCTCAGTTGGTAGAGCAGAGGGCTGAAAATCCTCGTGTCGTAGGTTCGATCCCTACTC 28435 ||||||||||||||||||||||| |||||||||||||||||| ||||| ||||| | | Sbjct 16333 TAGCTCAGTTGGTAGAGCAGAGGACTGAAAATCCTCGTGTCGGCGGTTCAATCCCGTCCC 16392 Query 28436 CGTCCACCA 28444 | |||||| Sbjct 16393 TGACCACCA 16401 >seq2250 Length=3703 Score = 82.4 bits (90), Expect = 8e-11 Identities = 51/55 (93%), Gaps = 0/55 (0%) Strand=Plus/Minus Query 28376 TAGCTCAGTTGGTAGAGCAGAGGGCTGAAAATCCTCGTGTCGTAGGTTCGATCCC 28430 ||||||||||||||||||||||| |||||||||||||||||| |||||||| || Sbjct 3633 TAGCTCAGTTGGTAGAGCAGAGGACTGAAAATCCTCGTGTCGATGGTTCGATTCC 3579 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 519794067513840