Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alces_20americanus_20[genbank_20GCA_5F900089705.1_202017-06-20] 5,099 sequences; 74,234,735 total letters Query= NC_028892.1 Length=49949 Score E Sequences producing significant alignments: (Bits) Value seq2440 127 7e-25 seq1312 120 1e-22 seq4300 113 1e-20 seq4483 95.1 4e-15 seq496 91.5 5e-14 seq4079 87.8 6e-13 seq2179 82.4 2e-11 seq4239 80.6 9e-11 seq112 80.6 9e-11 >seq2440 Length=54041 Score = 127 bits (140), Expect = 7e-25 Identities = 181/252 (72%), Gaps = 2/252 (1%) Strand=Plus/Minus Query 39046 ACGTACCGGATCACGTCGCCACGGCGACGGTCATCGAAGTCGATGTCCACGTCGGGCATG 39105 |||||| |||| ||| | |||| ||| |||||||| | ||| | || |||||| Sbjct 29214 ACGTACTGGATTACGCGGTAGCGGCCTTCGTCGTCGAAGTCCACGTCTATATCCGGCATG 29155 Query 39106 GAGACACGCTCAGGGTTCAGGAACCGCTCGAAGATGAGCCCGTGAGGGATGGGGTCCAGG 39165 |||| ||||| || |||||||| |||||||| | || ||| | |||||||||||||| Sbjct 29154 GAGATGCGCTCCGGATTCAGGAAACGCTCGAACAGCAGGTCGTAACGGATGGGGTCCAGG 29095 Query 39166 TCGGTGATCCCGAGGGCGTACGCGGCCAGCG-AGCCAGCCGCAGAGCCGCGCCCAGGGCC 39224 | |||||| || ||| ||| || | ||| ||| ||||| |||||| || || || Sbjct 29094 TTGGTGATGCCCAGGCAGTAGGC-TACGGCGCTGCCCGCCGCGCTGCCGCGGCCCGGCCC 29036 Query 39225 GACCCACACGCCGTTCTCCTTCGCCCAGCCGATGAAGTCGGCGACGACGAGGAAGTACGA 39284 || | | |||||| | ||| |||||| ||| || || || | ||||||||| Sbjct 29035 CACGGAAATGCCGTTTTTCTTGGCCCAGTTGATAAAATCCTGCACAATGAGGAAGTAGTC 28976 Query 39285 CGGGAACCCCAT 39296 |||||| ||||| Sbjct 28975 CGGGAAGCCCAT 28964 >seq1312 Length=3891 Score = 120 bits (132), Expect = 1e-22 Identities = 229/337 (68%), Gaps = 3/337 (1%) Strand=Plus/Minus Query 38997 TCCGTACGTCGCGATCTGTGCGACCTTGTCACTGCCGTACTTCTCGGTGACGTACCGGAT 39056 |||||| || ||| || || || || || ||||| || ||||| || || | | Sbjct 3335 TCCGTAGGTGATGATATGGGCCACTTTCTCGGCCCCGTATTTGTCGGTCACCCACTGCAG 3276 Query 39057 CACGTCGCCACGGCGACGGTCATCGAAGTCGATGTCCACGTCGGGCATGGAGACACGCTC 39116 ||| | || || | ||| |||||||| | ||| | || || | ||||| ||| || Sbjct 3275 CACCTTACCTCGTCCGTCGTCGTCGAAGTCCACGTCGATATCCGGGAGGGAGATACGGTC 3216 Query 39117 AGGGTTCAGGAACCGCTCGAAGATGAGCCCGTGAGGGATGGGGTCCAGGTCGGTGATCCC 39176 ||||| ||||| |||||||| | ||| ||| ||||||||||| ||||| || Sbjct 3215 CGGGTTGAGGAATCGCTCGAACAGGAGGTCGTACTTGATGGGGTCCACCATCGTGATGCC 3156 Query 39177 GAGGGCGTACGCGGCCAGCGAGCCAGCCGCAGAGCCGCGCCCAGGGCCGACCCACACGCC 39236 ||| ||| || | ||||| || || || || || ||||| || ||||||||||| Sbjct 3155 CAGGCAGTATGCCACTGTGGAGCCTGCTGCCGACCCACGGCCAGGTCCCACCCACACGCC 3096 Query 39237 GTTCTC---CTTCGCCCAGCCGATGAAGTCGGCGACGACGAGGAAGTACGACGGGAACCC 39293 | ||| | ||||| ||| |||||| |||||||||||||| |||||| || Sbjct 3095 GAGCTCGTTCCTCGCCGCATTGATATAGTCGGATACGACGAGGAAGTAGCCCGGGAAGCC 3036 Query 39294 CATCTGGTTGATCATGTCGATCTCGTACTCGACCTGC 39330 ||| || || || | | |||| ||| || |||| Sbjct 3035 CATGGTCTTCATGATATGCAGCTCGAACTTGATCTGC 2999 >seq4300 Length=42233 Score = 113 bits (124), Expect = 1e-20 Identities = 176/252 (70%), Gaps = 0/252 (0%) Strand=Plus/Plus Query 39046 ACGTACCGGATCACGTCGCCACGGCGACGGTCATCGAAGTCGATGTCCACGTCGGGCATG 39105 |||||| |||| || | | |||| ||| |||||||| | ||| | |||||||||| Sbjct 9702 ACGTACTGGATTACCTTGTAGCGGCCTTCGTCGTCGAAGTCCACGTCGATGTCGGGCATG 9761 Query 39106 GAGACACGCTCAGGGTTCAGGAACCGCTCGAAGATGAGCCCGTGAGGGATGGGGTCCAGG 39165 || ||||| || |||||||| |||||||| | ||| ||| | |||||||||||| Sbjct 9762 CTGATGCGCTCCGGATTCAGGAAGCGCTCGAACAGGAGGTCGTAGCGTATGGGGTCCAGG 9821 Query 39166 TCGGTGATCCCGAGGGCGTACGCGGCCAGCGAGCCAGCCGCAGAGCCGCGCCCAGGGCCG 39225 | |||||| | ||| ||| | ||| ||| || || |||||||| || || Sbjct 9822 TTGGTGATGCGCAGGCAGTAGCTGACCACGCTGCCCGCGGCGCTTCCGCGCCCCGGCCCC 9881 Query 39226 ACCCACACGCCGTTCTCCTTCGCCCAGCCGATGAAGTCGGCGACGACGAGGAAGTACGAC 39285 ||| | || |||| | ||| |||||| ||| ||||| |||| ||||| || | Sbjct 9882 ACCGAAACCCCGTGCGTCTTGGCCCAGTTGATAAAGTCCTGAACGATAAGGAAATAGTCC 9941 Query 39286 GGGAACCCCATC 39297 || || |||||| Sbjct 9942 GGAAAGCCCATC 9953 >seq4483 Length=5740 Score = 95.1 bits (104), Expect = 4e-15 Identities = 204/303 (67%), Gaps = 3/303 (1%) Strand=Plus/Plus Query 39031 CCGTACTTCTCGGTGACGTACCGGATCACGTCGCCACGGCGACGGTCATCGAAGTCGATG 39090 ||||| ||||| || || || | | || | ||| || | ||||||||| || | | Sbjct 3594 CCGTATTTCTCCGTCACCCACTGCAATACCTTGCCTCGCCCGTCGTCATCGAAATCCACG 3653 Query 39091 TCCACGTCGGGCATGGAGACACGCTCAGGGTTCAGGAACCGCTCGAAGATGAGCCCGTGA 39150 || | ||||||| |||| ||| || || || ||||| |||||||| | ||| ||| Sbjct 3654 TCGATATCGGGCAGTGAGATACGGTCGGGATTGAGGAAACGCTCGAACAGGAGATCGTAT 3713 Query 39151 GGGATGGGGTCCAGGTCGGTGATCCCGAGGGCGTACGCGGCCAGCGAGCCAGCCGCAGAG 39210 | || |||| ||||| |||||| ||| || ||| || || || || || Sbjct 3714 TTCAACGGATCCACCATCGTGATGCCGAGGCAGTAGGCCACCACAGATCCGGCGGCGGAA 3773 Query 39211 CCGCGCCCAGGGCCGACCCACACGCC--GTTCTC-CTTCGCCCAGCCGATGAAGTCGGCG 39267 || ||||| || || ||||| ||||| ||||| ||||||| ||| | || Sbjct 3774 CCACGCCCCGGACCAACCCATACGCCCAGTTCTTTCTTCGCCACATTGATATAATCCTGT 3833 Query 39268 ACGACGAGGAAGTACGACGGGAACCCCATCTGGTTGATCATGTCGATCTCGTACTCGACC 39327 |||||||||||||| |||||| ||||| || || || | || ||| ||| ||| Sbjct 3834 ACGACGAGGAAGTAGCCCGGGAATCCCATGGTCTTCATGATATGGAGCTCAAACTTCACC 3893 Query 39328 TGC 39330 ||| Sbjct 3894 TGC 3896 >seq496 Length=23570 Score = 91.5 bits (100), Expect = 5e-14 Identities = 166/240 (69%), Gaps = 5/240 (2%) Strand=Plus/Plus Query 39075 GTCATCGAAGTCGATGTCCACGTCGGGCATGGAGACACGCTCAGGGTTCAGGAACCGCTC 39134 ||| ||||||||| | || | ||||||| ||||| || |||||||||||||| || || Sbjct 16957 GTCGTCGAAGTCGGTATCGATATCGGGCAGGGAGATGCGGTCAGGGTTCAGGAAACGTTC 17016 Query 39135 GAAGATGAGCCCGTGAGGGATGGGGTCCAGGTCGGTGATCCCGAGGGCGTACGCGGCCA- 39193 || | || | | | ||||||||| | || || || ||| || || ||| Sbjct 17017 AAACAGCAGGTCATACTTCAAGGGGTCCAGTTTCGTAATGCCCAGGCAATAGGCCACCAC 17076 Query 39194 GCGAGCCAGCCGCAGAGCCGCGCCCAGGGCCGACCCACACGCCGTTCTCCTT---CGCCC 39250 || | || || |||||||| || || || || ||||||||| | ||||| || Sbjct 17077 GCTA-CCGGCAGCAGAGCCACGGCCCGGTCCCACCCACACGTCCAGTTCCTTGCGGGCGG 17135 Query 39251 AGCCGATGAAGTCGGCGACGACGAGGAAGTACGACGGGAACCCCATCTGGTTGATCATGT 39310 || ||||||||| |||| ||||||||| |||||| |||||| || || |||| Sbjct 17136 AGTTGATGAAGTCCTGCACGATGAGGAAGTAACCCGGGAATCCCATCGTCTTCATGATGT 17195 >seq4079 Length=28942 Score = 87.8 bits (96), Expect = 6e-13 Identities = 182/269 (68%), Gaps = 3/269 (1%) Strand=Plus/Plus Query 39057 CACGTCGCCACGGCGACGGTCATCGAAGTCGATGTCCACGTCGGGCATGGAGACACGCTC 39116 ||| | |||||||| | || ||||||||| | || | ||||||| ||||| ||| || Sbjct 12019 CACCTTGCCACGGCCATCATCGTCGAAGTCGGTATCGATATCGGGCAGGGAGATACGGTC 12078 Query 39117 AGGGTTCAGGAACCGCTCGAAGATGAGCCCGTGAGGGATGGGGTCCAGGTCGGTGATCCC 39176 ||||||||||| |||||||| | || ||| | ||||| | | ||||| || Sbjct 12079 GGGGTTCAGGAAACGCTCGAACAGCAGGTCGTACTTCAGCGGGTCGATCTTCGTGATGCC 12138 Query 39177 GAGGGCGTACGCGGCCAGCGAGCCAGCCGCAGAGCCGCGCCCAGGGCCGACCCACACGCC 39236 ||| ||| || ||| || || || ||||| || || || || ||| |||||| Sbjct 12139 CAGGCAGTAGGCCACCACACTACCGGCTGCCGAGCCACGGCCTGGCCCCACCATCACGCC 12198 Query 39237 --GTTC-TCCTTCGCCCAGCCGATGAAGTCGGCGACGACGAGGAAGTACGACGGGAACCC 39293 |||| || || || ||||||||| |||| ||||||||| ||||| || Sbjct 12199 CAGTTCGTCGCGGGCGGAGTTGATGAAGTCCTGTACGATGAGGAAGTAGCCGGGGAAGCC 12258 Query 39294 CATCTGGTTGATCATGTCGATCTCGTACT 39322 ||| || || |||| || ||| ||| Sbjct 12259 CATGGTCTTCATGATGTGGAGTTCGAACT 12287 >seq2179 Length=6749 Score = 82.4 bits (90), Expect = 2e-11 Identities = 149/218 (68%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 39010 ATCTGTGCGACCTTGTCACTGCCGTACTTCTCGGTGACGTACCGGATCACGTCGCCACGG 39069 ||||| || || ||| || ||||| || ||||| ||||| ||| || || ||| Sbjct 739 ATCTGCGCCACGCGGTCGCTCCCGTATTTTTCGGTAACGTAGTCGATAACCTCCTGACGT 798 Query 39070 CGACGGTCATCGAAGTCGATGTCCACGTCGGGCATGGAGACACGCTCAGGGTTCAGGAAC 39129 | || |||||| || || | || ||||| || || ||||| || |||| || Sbjct 799 CTTTCGTAGCAGAAGTCAATATCAAAATCAGGCATTGAAACGCGCTCGGGATTCAAAAAG 858 Query 39130 CGCTCGAAGATGAGCCCGTGAGGGATGGGGTCCAGGTCGGTGATCCCGAGGGCGTACGCG 39189 ||||| || ||||| ||| || ||||| ||||||||||| |||| ||| || Sbjct 859 CGCTCAAAAATGAGGTCGTATTTCATCGGGTCAAGGTCGGTGATTCCGATACAGTAAGCT 918 Query 39190 GCCAGCGAGCCAGCCGCAGAGCCGCGCCCAGGGCCGAC 39227 || |||||||| || | || || ||||| || || || Sbjct 919 GCGAGCGAGCCCGCGCCCGAACCTCGCCCGGGACCTAC 956 >seq4239 Length=97330 Score = 80.6 bits (88), Expect = 9e-11 Identities = 153/225 (68%), Gaps = 3/225 (1%) Strand=Plus/Minus Query 39075 GTCATCGAAGTCGATGTCCACGTCGGGCATGGAGACACGCTCAGGGTTCAGGAACCGCTC 39134 ||| |||||||| | || | ||||||| |||| || |||||||||||||| ||||| Sbjct 51799 GTCGTCGAAGTCAGTATCGATATCGGGCAGAGAGATGCGGTCAGGGTTCAGGAAACGCTC 51740 Query 39135 GAAGATGAGCCCGTGAGGGATGGGGTCCAGGTCGGTGATCCCGAGGGCGTACGCGGCCAG 39194 |||| | ||| | ||||| || || || || ||| || || ||| Sbjct 51739 AAAGAGCAAATCGTACTTCAGCGGGTCGAGCCTCGTAATGCCCAGGCAATAAGCAACCAC 51680 Query 39195 CGAGCCAGCCGCAGAGCCGCGCCCAGGGCCGACCCACACGCCGTTCTCCTTC---GCCCA 39251 ||| || ||||| || || | |||||||| |||||||| || ||| ||| || | Sbjct 51679 CGACCCCGCCGCCGAACCTCTGCCAGGGCCAACCCACACACCCAGCTCGTTCCTTGCGCT 51620 Query 39252 GCCGATGAAGTCGGCGACGACGAGGAAGTACGACGGGAACCCCAT 39296 | ||||||||| || | ||||||||| ||||| ||||| Sbjct 51619 GTTGATGAAGTCCTGCACAATGAGGAAGTAGCCAGGGAAGCCCAT 51575 >seq112 Length=216842 Score = 80.6 bits (88), Expect = 9e-11 Identities = 154/225 (68%), Gaps = 3/225 (1%) Strand=Plus/Plus Query 39075 GTCATCGAAGTCGATGTCCACGTCGGGCATGGAGACACGCTCAGGGTTCAGGAACCGCTC 39134 ||| ||||||||| |||| | ||||||| ||||| || || || || ||||||||||| Sbjct 51939 GTCGTCGAAGTCGGTGTCGATATCGGGCAGGGAGATGCGGTCGGGATTGAGGAACCGCTC 51998 Query 39135 GAAGATGAGCCCGTGAGGGATGGGGTCCAGGTCGGTGATCCCGAGGGCGTACGCGGCCAG 39194 ||| | || ||| || ||||| | | ||||| |||||| || || ||| Sbjct 51999 GAACAGCAGGTCGTACTTGAGCGGGTCTATCTGTGTGATGCCGAGGCAATAGGCCACCAC 52058 Query 39195 CGAGCCAGCCGCAGAGCCGCGCCCAGGGCCGACCCACACGCCGTTCTCCTT-CGCCCAGC 39253 ||| || || || ||||| || || || || ||| ||||| || || || | || Sbjct 52059 CGAACCGGCTGCCGAGCCTCGTCCGGGTCCCACCATGACGCCAAGATCGTTGCGTGCGGC 52118 Query 39254 --CGATGAAGTCGGCGACGACGAGGAAGTACGACGGGAACCCCAT 39296 ||||||||| || | ||||||||| ||||| ||||| Sbjct 52119 GTTGATGAAGTCCTGCACAATGAGGAAGTAGCCGGGGAATCCCAT 52163 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 159705529144818