Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alces_20americanus_20[genbank_20GCA_5F900089705.1_202017-06-20] 5,099 sequences; 74,234,735 total letters Query= NC_028894.1 Length=170336 Score E Sequences producing significant alignments: (Bits) Value seq2964 114 1e-20 >seq2964 Length=2227 Score = 114 bits (126), Expect = 1e-20 Identities = 508/792 (64%), Gaps = 17/792 (2%) Strand=Plus/Plus Query 40424 ATATCAGGATACATTCTTTTGCTTGCACACTCTAAAGCAAGCTGCTTAATATCATAGTTT 40483 ||||| ||||||||||| ||| || || || | ||| |||| ||| ||||| ||||| Sbjct 1104 ATATCCGGATACATTCTCTTGGAGGCGCATTCAAGAGCCAGCTTCTTGATATCGTAGTTA 1163 Query 40484 GGGTCGTCTTTATAAAGATTAACACCTTCTTCAACGAACATAACAAGTTTAGGGAAAATA 40543 || || | | | | | || | || || | | | | || || |||||||||| Sbjct 1164 GGATCACCCTCTTTACGGTTCAGTCCCTCCTTGATGGCAAACACCAGCTTAGGGAAAACC 1223 Query 40544 GGAGTTATCCCATCACGACCAAGACCTTTAATACGATTTTTCAGAATTGCTTTCTGAATC 40603 | |||| | || || || ||||| ||| | || |||||||| | ||||| ||| Sbjct 1224 GCAGTTCTGTGATTGCGGCCGAGACCAGCAATTCTGTTCTTCAGAATAGACTTCTGGATC 1283 Query 40604 ATTCGTTCAGTCCAGTCAGTTCCAGTACCAAATGTAATTGTCACAAAAGGAGTCTGACCA 40663 | ||| |||| ||||| ||| || | || || || ||||||||||| Sbjct 1284 AGACGTGACTCCCAGGATGTTCCCAGACCGAAACCGAGAGTTACGAACGGAGTCTGACCG 1343 Query 40664 TTTGAACTAAAGAGAGTATTTACTTCATATTCATAAGCTTGGAATGCATCATATACGTCT 40723 || || || || || ||||||||||||||| || ||||| || ||||| || Sbjct 1344 TTGGAGGTATGCAGGGTGTTTACTTCATATTCAAGAGACTGGAAGGCGTCATAGCACTCC 1403 Query 40724 TTTTCTGTTTTAGATTGAGCATAATTCAACGCATCAGTGATTTGCCATTTTTCCGCGTCC 40783 ||||| || | | | ||| | | || ||||| || ||||| | || || | Sbjct 1404 TTTTCAGTACGGGCTCGGGCAAAGCTGTCCGGATCAGGAATGTGCCACTCCTCGGCCATC 1463 Query 40784 TCAATATGTTTCGCATAGGTACGTT---TAACATAAGGAGAAAGTACTTTATCTACATTC 40840 | || || ||| | || | ||||||| || | ||| || | ||| ||| Sbjct 1464 TTCTGATACTT--CAT-GAAACTCTTGGTAACATACGGGGCAAGCACCTCATC-ACAGCG 1519 Query 40841 G-CAAAAGTCGTTCCGCCATATTGATGGGAAGCAACCTGTGCAGTAATTTGTGCCATAAT 40899 | | || || ||||| || |||| |||||||| || | || ||||| ||| Sbjct 1520 GTTGATGGTTGTACCGCCGTAGATATGGCTGGCAACCTGGGCGATGATCTGTGCGGTAAC 1579 Query 40900 TGCAGTAGCAACACTGATTGATTTAGGAGTTTCAATCTGTGCATTACCGAGCTTAAACCC 40959 || || || ||||||||| ||||| | ||| || | |||||||| | ||| || || Sbjct 1580 CGCGGTTGCGGTACTGATTGACTTAGGTGATTCGATTTCGGCATTACCCATCTTGAAACC 1639 Query 40960 GTTCTCAAGCATTCCTTTTAAATCTACTAAACAGCAATTAGTAAAT--GGAAGAGCAGGG 41017 | || |||||||| | ||| | | | || | | | | || |||||| | || Sbjct 1640 GCGTTCCAGCATTCCGCCGACATCGA-TCAGCATACAGTTGAACATCGGGAAGAAC-GGT 1697 Query 41018 GAATAATCAATATCATGGAAATGAATAATTCCGCTTTCATGTGCTTTCATAA-TAAAAGA 41076 ||||| || | ||| || ||||| || || |||||||| ||| ||| || | || Sbjct 1698 GAATAGTCGAGATCGTGAAAATGGATCTCCCCTCTTTCATGGGCTCTCACAACTTCCTGA 1757 Query 41077 CGCGACCAT---ATTTTTGGCAATGTGTTTAGATACAATACCAGCCATAAGGTCACGTTG 41133 | | ||| | ||| ||| ||| | |||||||| || | ||||||||| || Sbjct 1758 -GGAAGCATGTGCTGTTTTGCATAGTGGCGTGCAACAATACCTGCAAGAAGGTCACGCTG 1816 Query 41134 GGTTGGAAAAACACGAGAATCTTTATTAGCATTCTCGTTTAAAAGGTCTTTATTAGTTTT 41193 ||| |||| ||| || || || ||||||||||| | || ||| ||| | | Sbjct 1817 GGTCGGAATAACCTTGCTGTCCTTGTTGGCATTCTCGTTAAGCAGATCTGCATTTGACTG 1876 Query 41194 ATGAATCAATCC 41205 || |||| ||| Sbjct 1877 ATCGATCAGTCC 1888 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 544912466427840