Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alces_20americanus_20[genbank_20GCA_5F900089705.1_202017-06-20] 5,099 sequences; 74,234,735 total letters Query= NC_028925.1 Length=170822 Score E Sequences producing significant alignments: (Bits) Value seq2964 114 1e-20 >seq2964 Length=2227 Score = 114 bits (126), Expect = 1e-20 Identities = 535/827 (65%), Gaps = 47/827 (6%) Strand=Plus/Plus Query 39623 GCAATACGAGGAAGATTCAGTGTTACAACACCAAGATTATTACGTCCATCAAGAATTTCA 39682 || |||||||| |||||||| |||| ||||| ||||| ||||| || || | || | | Sbjct 951 GCGATACGAGGCAGATTCAGACTTACCACACCCAGATTGTTACGGCCGTCGTGGATCTGA 1010 Query 39683 TTACCAGTCGAATCTTTCCATACGCT-CAAGAAACTA-CGGCAACCCATTGGAGAAACAG 39740 ||| || || | |||||| | || || | ||||| ||||| |||| | Sbjct 1011 ACACCGTTC---TCCT--CATACGGGGCGAGGAATGAGCGGCAGCCCATCGGAGT--CTT 1063 Query 39741 GAACAGATGAGCCGGTGATAGCTTTAT----TGTTCTTAGCTGAAATAATATCAGGATAC 39796 ||| ||| ||||| | ||| | || || ||| | | | ||||| |||||| Sbjct 1064 GAA----TGAACCGGTAAC--CTTCACAACCTGATCGTAGTTCAGA--ATATCCGGATAC 1115 Query 39797 ATCCTTTTGCTTGCACACTCTAGAGCAAGCTGCTTGATATCATAGTTCGGGTCGTCTTTA 39856 || || ||| || || || ||||| |||| ||||||||| ||||| || || | | Sbjct 1116 ATTCTCTTGGAGGCGCATTCAAGAGCCAGCTTCTTGATATCGTAGTTAGGATCACCCTCT 1175 Query 39857 TAAAGATTAACACCTTCTTCAA---CAAACATAACAAGCTTAGGGAAAATAGGAGTTATT 39913 | | | || | || || | | |||||| | ||||||||||||| | |||| | Sbjct 1176 TTACGGTTCAGTCCCTCCTTGATGGCAAACA---CCAGCTTAGGGAAAACCGCAGTTCTG 1232 Query 39914 CCATCACGACCAAGACCTTTAATACGATTTTTCAGAATTGCTTTCTGAATCATTCGTTCA 39973 || || || ||||| ||| | || |||||||| | ||||| |||| ||| Sbjct 1233 TGATTGCGGCCGAGACCAGCAATTCTGTTCTTCAGAATAGACTTCTGGATCAGACGTGAC 1292 Query 39974 GTCCAGTCAGTTCCCGTACCAAATGTAATTGTCACAAAAGGGGTCTGTCCGTTTGAACTA 40033 |||| |||||| ||| || | || || || || ||||| ||||| || || Sbjct 1293 TCCCAGGATGTTCCCAGACCGAAACCGAGAGTTACGAACGGAGTCTGACCGTTGGAGGTA 1352 Query 40034 AAGAGAGTGTTTACTTCATATTCATAAGCTTGGAATGCATCATATACATCTTTTTCTGTT 40093 || |||||||||||||||||| || ||||| || ||||| || ||||| || Sbjct 1353 TGCAGGGTGTTTACTTCATATTCAAGAGACTGGAAGGCGTCATAGCACTCCTTTTCAGTA 1412 Query 40094 TTAGATTGGGCATAATTCAACGCATCAGTGATTTGCCATTTTTCTG-CATCCTC-AATAT 40151 | | ||||| | | || ||||| || ||||| | || | |||| || ||| Sbjct 1413 CGGGCTCGGGCAAAGCTGTCCGGATCAGGAATGTGCCACTCCTCGGCCATCTTCTGATAC 1472 Query 40152 GTTTTGCATAGGTGCGTTTAACATAAGGAGAAAATACTTTGTCTACATTAG-CAAAAGTC 40210 | || | | | ||||||| || | || || | || ||| | | || Sbjct 1473 TTCATGAAACTCTTGG--TAACATACGGGGCAAGCACCTCATC-ACAGCGGTTGATGGTT 1529 Query 40211 GTTCCGCC----ATATTGGTGAGAAGCAACTTGTGCAGTAATTTGTGCCATAATTGCAGT 40266 || ||||| |||| | || ||||| || || | || ||||| ||| || || Sbjct 1530 GTACCGCCGTAGATATGGCTG----GCAACCTGGGCGATGATCTGTGCGGTAACCGCGGT 1585 Query 40267 AGCAACACCAATTGATTTAGGAGTTTCAATCTGTGCATTACCGAGCTTAAATCCGTTTTC 40326 || || ||||| ||||| | ||| || | |||||||| | ||| || ||| ||| Sbjct 1586 TGCGGTACTGATTGACTTAGGTGATTCGATTTCGGCATTACCCATCTTGAAACCGCGTTC 1645 Query 40327 AAGCATTCCTTTTAAATCTACTAAACA-ACAATTAGTAAAT--GGAAGAGCAGGGGAATA 40383 |||||||| | ||| | | | || ||| || | | || |||||| | || ||||| Sbjct 1646 CAGCATTCCGCCGACATCGA-TCAGCATACAGTT-GAACATCGGGAAGAAC-GGTGAATA 1702 Query 40384 ATCAATATCATGGAAATGAATAATTCCGCTTTCATGTGCTTTCATAA 40430 || | ||| || ||||| || || |||||||| ||| ||| || Sbjct 1703 GTCGAGATCGTGAAAATGGATCTCCCCTCTTTCATGGGCTCTCACAA 1749 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 546467567303280