Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alces_20americanus_20[genbank_20GCA_5F900089705.1_202017-06-20] 5,099 sequences; 74,234,735 total letters Query= NC_028935.1 Length=88698 Score E Sequences producing significant alignments: (Bits) Value seq3868 86.0 4e-12 >seq3868 Length=178294 Score = 86.0 bits (94), Expect = 4e-12 Identities = 234/349 (67%), Gaps = 12/349 (3%) Strand=Plus/Minus Query 12493 GATGGCT-TCTTGTATGCCCTTTATGGTACACCTGCTGAGAGCCTTTGTGGGACGCAATT 12551 |||||| |||| ||||| |||||||||| |||||||||| || ||||| ||| | Sbjct 145967 GATGGCAATCTT-TATGCTATTTATGGTACTCCTGCTGAGAATCTATGTGGATTGCAGGT 145909 Query 12552 GAAGCAGTTCCGTAATATGTTTGGTGTTGTGAAAGATGTTTCTGATAAAGAATACTTCAC 12611 ||||||||| | |||| | || | || || |||||||||||| ||||| | | Sbjct 145908 AAAGCAGTTCAGAAATAAATACGGAATAGTAGAAAATGTTTCTGATAGGGAATATGTTTC 145849 Query 12612 TAACAGTTTCCATATGAACGTTGCAGCAGATATTACTCCGTATCAGAAGCAAGACTTGGA 12671 ||| |||||| | ||| | | ||||||||||| | | ||||| ||| ||| Sbjct 145848 TAATTCATTCCATTGTCATGTTACTGAGGATATTACTCCTATTGAAAAGCAGGACAAGGA 145789 Query 12672 AGAACCTCTGTTCCATAGCTGTAACGGTGGTCACATCCAGTACATTCGTCTTGCTAATCC 12731 || | | | | | | || || ||||| | || || || ||||| | | |||| Sbjct 145788 AGGCCGTTTCTGGGAAATGTGCAATGGTGGCAAAATACAATATGTTCGT-TACCCAATCA 145730 Query 12732 A-GAGAATCATAAAGCTATCAAGGCTTGTGTCTCAAGAGGT---ATGGGTAAGGGATTCT 12787 | | |||| |||| |||| || ||| |||| || |||| |||||||||| Sbjct 145729 ACTACAATCGCGAAGCGGTCAAAACTCTTGT---AAGACGTGCAATGGACAAGGGATTCT 145673 Query 12788 ATCAAGGTGTGAACTT-TGACTTAGCAATCTGTGAGAATTGTGGTCATC 12835 || | ||||| || || | ||| || ||||| | |||||||||| Sbjct 145672 ATGAGGGTGTCAATTTATCGCTTTCGTAT-TGTGATGACTGTGGTCATC 145625 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 283691169182601