Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alces_20americanus_20[genbank_20GCA_5F900089705.1_202017-06-20] 5,099 sequences; 74,234,735 total letters Query= NC_028945.1 Length=206713 Score E Sequences producing significant alignments: (Bits) Value seq2451 93.3 6e-14 seq2324 84.2 3e-11 >seq2451 Length=31860 Score = 93.3 bits (102), Expect = 6e-14 Identities = 122/169 (72%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 181461 GTCAGGAGCGCGTAAGAGGCGATGTTGAAGGGAAGCCCCAAGAAGACGTCCACGGACCGC 181520 || || |||||||| ||||| ||||||||||||| |||| ||| ||||| || ||| Sbjct 18353 GTAAGCAGCGCGTAGGAGGCTATGTTGAAGGGAACGCCCAGGAACACGTCGGCGCTGCGC 18412 Query 181521 TGATTCCAAAGGCAGGACAGTTTGTCATTGCGAACATAGAACTGGAATCCGTAGTGGCAC 181580 |||| | ||||||||||||| | | || ||||||||||| | ||||||| Sbjct 18413 TGATACAGCTGGCAGGACAGTTTTCCGCCGGCCACGTAGAACTGGAACAGGCAGTGGCAG 18472 Query 181581 GGCGGCAAAGCCATTAGATCGACCGCGCCGACATTCCAAGCCGAGACCA 181629 || |||| ||||| | || ||| || | ||||| |||| ||||| Sbjct 18473 GGGGGCAGGGCCATCTGGTCCACCTCGGCCGGGTTCCAGGCCGTGACCA 18521 >seq2324 Length=83463 Score = 84.2 bits (92), Expect = 3e-11 Identities = 195/289 (67%), Gaps = 4/289 (1%) Strand=Plus/Plus Query 181344 GGTTCGCGGTCAAGCTGTTCCTTCACCTGATCGAAGTGATTGTTGTAGATGTGGGTATCA 181403 |||||||| |||||||||| |||||| || | ||| ||| |||||||||||| || Sbjct 68137 GGTTCGCGAGAGAGCTGTTCCTCCACCTGCTCCATGTGGTTGAGGTAGATGTGGGTGTCG 68196 Query 181404 CCAAGGTTGCCGATCAGTTC-CCCGACTTCAAGACCACATTCCAGCGCGATCA-GATGTG 181461 || | || ||| | ||| |||| | || || |||||| |||| |||| ||| | Sbjct 68197 CCTGTGGTGTGGATGAATTCGCCCGGC-CGGAGCCCGCATTCCTGCGCTATCATCATG-G 68254 Query 181462 TCAGGAGCGCGTAAGAGGCGATGTTGAAGGGAAGCCCCAAGAAGACGTCCACGGACCGCT 181521 | | |||| || || ||||||||||| || | || | ||| ||| || |||| Sbjct 68255 TTAACAGCGAATACGACGCGATGTTGAACGGCACGCCGAGGAAAGTGTCGGCGCTGCGCT 68314 Query 181522 GATTCCAAAGGCAGGACAGTTTGTCATTGCGAACATAGAACTGGAATCCGTAGTGGCACG 181581 | | |||| || ||||| | | || ||||||||||| | ||||||| | Sbjct 68315 GGTAGAGCTGGCACGAGAGTTTCCCCTCCGCCACGTAGAACTGGAACAGGCAGTGGCAGG 68374 Query 181582 GCGGCAAAGCCATTAGATCGACCGCGCCGACATTCCAAGCCGAGACCAT 181630 | |||| ||||| || || |||| ||||| |||| |||||| Sbjct 68375 GGGGCAGCGCCATCCTCTCCACTTCGCCAGGGTTCCAGGCCGTGACCAT 68423 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 661311446974920