Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alces_20americanus_20[genbank_20GCA_5F900089705.1_202017-06-20] 5,099 sequences; 74,234,735 total letters Query= NC_028976.1 Length=50113 Score E Sequences producing significant alignments: (Bits) Value seq2440 123 8e-24 seq1312 120 1e-22 seq4300 113 1e-20 seq496 95.1 4e-15 seq2179 91.5 5e-14 seq4483 89.7 2e-13 seq4239 89.7 2e-13 seq4079 82.4 2e-11 seq112 80.6 9e-11 >seq2440 Length=54041 Score = 123 bits (136), Expect = 8e-24 Identities = 180/252 (71%), Gaps = 2/252 (1%) Strand=Plus/Minus Query 39479 ACGTACCGGATCACGTCGCCACGGCGACGGTCATCGAAGTCGATGTCCACGTCGGGCATG 39538 |||||| |||| ||| | |||| ||| |||||||| | ||| | || |||||| Sbjct 29214 ACGTACTGGATTACGCGGTAGCGGCCTTCGTCGTCGAAGTCCACGTCTATATCCGGCATG 29155 Query 39539 GAGACGCGCTCAGGGTTCAGGAACCGCTCGAAGATGAGCCCGTGAGGGATGGGGTCCAGG 39598 |||| |||||| || |||||||| |||||||| | || ||| | |||||||||||||| Sbjct 29154 GAGATGCGCTCCGGATTCAGGAAACGCTCGAACAGCAGGTCGTAACGGATGGGGTCCAGG 29095 Query 39599 TCGGTGATCCCGAGGGCGTACGCGGCCAGCG-AGCCAGCCGCAGAGCCACGCCCAGGGCC 39657 | |||||| || ||| ||| || | ||| ||| ||||| ||| || || || || Sbjct 29094 TTGGTGATGCCCAGGCAGTAGGC-TACGGCGCTGCCCGCCGCGCTGCCGCGGCCCGGCCC 29036 Query 39658 GACCCACACACCGTTCTCCTTCGCCCAGCCGATGAAGTCGGCGACGACGAGGAAGTACGA 39717 || | | ||||| | ||| |||||| ||| || || || | ||||||||| Sbjct 29035 CACGGAAATGCCGTTTTTCTTGGCCCAGTTGATAAAATCCTGCACAATGAGGAAGTAGTC 28976 Query 39718 CGGGAACCCCAT 39729 |||||| ||||| Sbjct 28975 CGGGAAGCCCAT 28964 >seq1312 Length=3891 Score = 120 bits (132), Expect = 1e-22 Identities = 238/349 (68%), Gaps = 9/349 (3%) Strand=Plus/Minus Query 39387 GCACGCGGGCCGCGTCCTTCATCGC--GTTGCG-GGCCTTGATCCTGCCGTACGTCGCGA 39443 |||| || ||| | ||||| || || ||| | |||| || || ||||| || || Sbjct 3378 GCACTCGTGCCACATCCTTGATAGCCAGTTTTGTGGCC---ATACTTCCGTAGGTGATGA 3322 Query 39444 TCTGTGCGACCTTGTCGCTGCCGTACTTCTCGGTGACGTACCGGATCACGTCGCCACGGC 39503 | || || || || ||| ||||| || ||||| || || | | ||| | || || | Sbjct 3321 TATGGGCCACTTTCTCGGCCCCGTATTTGTCGGTCACCCACTGCAGCACCTTACCTCGTC 3262 Query 39504 GACGGTCATCGAAGTCGATGTCCACGTCGGGCATGGAGACGCGCTCAGGGTTCAGGAACC 39563 ||| |||||||| | ||| | || || | ||||| || || ||||| ||||| | Sbjct 3261 CGTCGTCGTCGAAGTCCACGTCGATATCCGGGAGGGAGATACGGTCCGGGTTGAGGAATC 3202 Query 39564 GCTCGAAGATGAGCCCGTGAGGGATGGGGTCCAGGTCGGTGATCCCGAGGGCGTACGCGG 39623 ||||||| | ||| ||| ||||||||||| ||||| || ||| ||| || Sbjct 3201 GCTCGAACAGGAGGTCGTACTTGATGGGGTCCACCATCGTGATGCCCAGGCAGTATGCCA 3142 Query 39624 CCAGCGAGCCAGCCGCAGAGCCACGCCCAGGGCCGACCCACACACCGTTCTC---CTTCG 39680 | ||||| || || || ||||| ||||| || |||||||| ||| ||| | ||| Sbjct 3141 CTGTGGAGCCTGCTGCCGACCCACGGCCAGGTCCCACCCACACGCCGAGCTCGTTCCTCG 3082 Query 39681 CCCAGCCGATGAAGTCGGCGACGACGAGGAAGTACGACGGGAACCCCAT 39729 || ||| |||||| |||||||||||||| |||||| ||||| Sbjct 3081 CCGCATTGATATAGTCGGATACGACGAGGAAGTAGCCCGGGAAGCCCAT 3033 >seq4300 Length=42233 Score = 113 bits (124), Expect = 1e-20 Identities = 193/280 (69%), Gaps = 0/280 (0%) Strand=Plus/Plus Query 39479 ACGTACCGGATCACGTCGCCACGGCGACGGTCATCGAAGTCGATGTCCACGTCGGGCATG 39538 |||||| |||| || | | |||| ||| |||||||| | ||| | |||||||||| Sbjct 9702 ACGTACTGGATTACCTTGTAGCGGCCTTCGTCGTCGAAGTCCACGTCGATGTCGGGCATG 9761 Query 39539 GAGACGCGCTCAGGGTTCAGGAACCGCTCGAAGATGAGCCCGTGAGGGATGGGGTCCAGG 39598 || |||||| || |||||||| |||||||| | ||| ||| | |||||||||||| Sbjct 9762 CTGATGCGCTCCGGATTCAGGAAGCGCTCGAACAGGAGGTCGTAGCGTATGGGGTCCAGG 9821 Query 39599 TCGGTGATCCCGAGGGCGTACGCGGCCAGCGAGCCAGCCGCAGAGCCACGCCCAGGGCCG 39658 | |||||| | ||| ||| | ||| ||| || || || ||||| || || Sbjct 9822 TTGGTGATGCGCAGGCAGTAGCTGACCACGCTGCCCGCGGCGCTTCCGCGCCCCGGCCCC 9881 Query 39659 ACCCACACACCGTTCTCCTTCGCCCAGCCGATGAAGTCGGCGACGACGAGGAAGTACGAC 39718 ||| | || |||| | ||| |||||| ||| ||||| |||| ||||| || | Sbjct 9882 ACCGAAACCCCGTGCGTCTTGGCCCAGTTGATAAAGTCCTGAACGATAAGGAAATAGTCC 9941 Query 39719 GGGAACCCCATCTGGTTGATCATGTCGATCTCGTAGTCGA 39758 || || |||||| | || | | || |||| |||||| Sbjct 9942 GGAAAGCCCATCCTGGAGACGGTCTTGAGCTCGAAGTCGA 9981 >seq496 Length=23570 Score = 95.1 bits (104), Expect = 4e-15 Identities = 167/240 (70%), Gaps = 5/240 (2%) Strand=Plus/Plus Query 39508 GTCATCGAAGTCGATGTCCACGTCGGGCATGGAGACGCGCTCAGGGTTCAGGAACCGCTC 39567 ||| ||||||||| | || | ||||||| ||||| ||| |||||||||||||| || || Sbjct 16957 GTCGTCGAAGTCGGTATCGATATCGGGCAGGGAGATGCGGTCAGGGTTCAGGAAACGTTC 17016 Query 39568 GAAGATGAGCCCGTGAGGGATGGGGTCCAGGTCGGTGATCCCGAGGGCGTACGCGGCCA- 39626 || | || | | | ||||||||| | || || || ||| || || ||| Sbjct 17017 AAACAGCAGGTCATACTTCAAGGGGTCCAGTTTCGTAATGCCCAGGCAATAGGCCACCAC 17076 Query 39627 GCGAGCCAGCCGCAGAGCCACGCCCAGGGCCGACCCACACACCGTTCTCCTT---CGCCC 39683 || | || || ||||||||||| || || || |||||||| | ||||| || Sbjct 17077 GCTA-CCGGCAGCAGAGCCACGGCCCGGTCCCACCCACACGTCCAGTTCCTTGCGGGCGG 17135 Query 39684 AGCCGATGAAGTCGGCGACGACGAGGAAGTACGACGGGAACCCCATCTGGTTGATCATGT 39743 || ||||||||| |||| ||||||||| |||||| |||||| || || |||| Sbjct 17136 AGTTGATGAAGTCCTGCACGATGAGGAAGTAACCCGGGAATCCCATCGTCTTCATGATGT 17195 >seq2179 Length=6749 Score = 91.5 bits (100), Expect = 5e-14 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 39443 ATCTGTGCGACCTTGTCGCTGCCGTACTTCTCGGTGACGTACCGGATCACGTCGCCACGG 39502 ||||| || || |||||| ||||| || ||||| ||||| ||| || || ||| Sbjct 739 ATCTGCGCCACGCGGTCGCTCCCGTATTTTTCGGTAACGTAGTCGATAACCTCCTGACGT 798 Query 39503 CGACGGTCATCGAAGTCGATGTCCACGTCGGGCATGGAGACGCGCTCAGGGTTCAGGAAC 39562 | || |||||| || || | || ||||| || |||||||| || |||| || Sbjct 799 CTTTCGTAGCAGAAGTCAATATCAAAATCAGGCATTGAAACGCGCTCGGGATTCAAAAAG 858 Query 39563 CGCTCGAAGATGAGCCCGTGAGGGATGGGGTCCAGGTCGGTGATCCCGAGGGCGTACGCG 39622 ||||| || ||||| ||| || ||||| ||||||||||| |||| ||| || Sbjct 859 CGCTCAAAAATGAGGTCGTATTTCATCGGGTCAAGGTCGGTGATTCCGATACAGTAAGCT 918 Query 39623 GCCAGCGAGCCAGCCGCAGAGCCACGCCCAGGGCCGAC 39660 || |||||||| || | || || ||||| || || || Sbjct 919 GCGAGCGAGCCCGCGCCCGAACCTCGCCCGGGACCTAC 956 >seq4483 Length=5740 Score = 89.7 bits (98), Expect = 2e-13 Identities = 203/303 (67%), Gaps = 3/303 (1%) Strand=Plus/Plus Query 39430 GCCGTACGTCGCGATCTGTGCGACCTTGTCGCTGCCGTACTTCTCGGTGACGTACCGGAT 39489 |||||| || ||| || || || |||| ||||| ||||| || || || | | Sbjct 3560 GCCGTAGGTGATGATATGCGCCACGCGGTCGGCTCCGTATTTCTCCGTCACCCACTGCAA 3619 Query 39490 CACGTCGCCACGGCGACGGTCATCGAAGTCGATGTCCACGTCGGGCATGGAGACGCGCTC 39549 || | ||| || | ||||||||| || | ||| | ||||||| |||| || || Sbjct 3620 TACCTTGCCTCGCCCGTCGTCATCGAAATCCACGTCGATATCGGGCAGTGAGATACGGTC 3679 Query 39550 AGGGTTCAGGAACCGCTCGAAGATGAGCCCGTGAGGGATGGGGTCCAGGTCGGTGATCCC 39609 || || ||||| |||||||| | ||| ||| | || |||| ||||| || Sbjct 3680 GGGATTGAGGAAACGCTCGAACAGGAGATCGTATTTCAACGGATCCACCATCGTGATGCC 3739 Query 39610 GAGGGCGTACGCGGCCAGCGAGCCAGCCGCAGAGCCACGCCCAGGGCCGACCCACACACC 39669 |||| ||| || ||| || || || || || |||||||| || || ||||| || || Sbjct 3740 GAGGCAGTAGGCCACCACAGATCCGGCGGCGGAACCACGCCCCGGACCAACCCATACGCC 3799 Query 39670 --GTTCTC-CTTCGCCCAGCCGATGAAGTCGGCGACGACGAGGAAGTACGACGGGAACCC 39726 ||||| ||||||| ||| | || |||||||||||||| |||||| || Sbjct 3800 CAGTTCTTTCTTCGCCACATTGATATAATCCTGTACGACGAGGAAGTAGCCCGGGAATCC 3859 Query 39727 CAT 39729 ||| Sbjct 3860 CAT 3862 >seq4239 Length=97330 Score = 89.7 bits (98), Expect = 2e-13 Identities = 155/225 (69%), Gaps = 3/225 (1%) Strand=Plus/Minus Query 39508 GTCATCGAAGTCGATGTCCACGTCGGGCATGGAGACGCGCTCAGGGTTCAGGAACCGCTC 39567 ||| |||||||| | || | ||||||| |||| ||| |||||||||||||| ||||| Sbjct 51799 GTCGTCGAAGTCAGTATCGATATCGGGCAGAGAGATGCGGTCAGGGTTCAGGAAACGCTC 51740 Query 39568 GAAGATGAGCCCGTGAGGGATGGGGTCCAGGTCGGTGATCCCGAGGGCGTACGCGGCCAG 39627 |||| | ||| | ||||| || || || || ||| || || ||| Sbjct 51739 AAAGAGCAAATCGTACTTCAGCGGGTCGAGCCTCGTAATGCCCAGGCAATAAGCAACCAC 51680 Query 39628 CGAGCCAGCCGCAGAGCCACGCCCAGGGCCGACCCACACACCGTTCTCCTTC---GCCCA 39684 ||| || ||||| || || | |||||||| ||||||||||| ||| ||| || | Sbjct 51679 CGACCCCGCCGCCGAACCTCTGCCAGGGCCAACCCACACACCCAGCTCGTTCCTTGCGCT 51620 Query 39685 GCCGATGAAGTCGGCGACGACGAGGAAGTACGACGGGAACCCCAT 39729 | ||||||||| || | ||||||||| ||||| ||||| Sbjct 51619 GTTGATGAAGTCCTGCACAATGAGGAAGTAGCCAGGGAAGCCCAT 51575 >seq4079 Length=28942 Score = 82.4 bits (90), Expect = 2e-11 Identities = 230/348 (66%), Gaps = 9/348 (3%) Strand=Plus/Plus Query 39388 CACGCGGGCCGCGTCCTTCATCGCGTTG--CG-GGCCTTGATCCTGCCGTACGTCGCGAT 39444 |||||||||| ||||||| || | ||| || |||| ||| || |||| || ||| Sbjct 11917 CACGCGGGCCACGTCCTTGATGGAGTTCTTCGTGGCC---ATCGTGGCGTAGGTGATGAT 11973 Query 39445 CTGTGCGACCTTGTCGCTGCCGTACTTCTCGGTGACGTACCGGATCACGTCGCCACGGCG 39504 || || || || ||| ||||| || || | | ||| | |||||||| Sbjct 11974 ATGGGCACAGTTCTCATGGCCATACTTATCCTCTACCCATTTTAGCACCTTGCCACGGCC 12033 Query 39505 ACGGTCATCGAAGTCGATGTCCACGTCGGGCATGGAGACGCGCTCAGGGTTCAGGAACCG 39564 | || ||||||||| | || | ||||||| ||||| || || ||||||||||| || Sbjct 12034 ATCATCGTCGAAGTCGGTATCGATATCGGGCAGGGAGATACGGTCGGGGTTCAGGAAACG 12093 Query 39565 CTCGAAGATGAGCCCGTGAGGGATGGGGTCCAGGTCGGTGATCCCGAGGGCGTACGCGGC 39624 |||||| | || ||| | ||||| | | ||||| || ||| ||| || | Sbjct 12094 CTCGAACAGCAGGTCGTACTTCAGCGGGTCGATCTTCGTGATGCCCAGGCAGTAGGCCAC 12153 Query 39625 CAGCGAGCCAGCCGCAGAGCCACGCCCAGGGCCGACC--CACACACCGTTC-TCCTTCGC 39681 || || || || |||||||| || || || ||| ||| | | |||| || || Sbjct 12154 CACACTACCGGCTGCCGAGCCACGGCCTGGCCCCACCATCACGCCCAGTTCGTCGCGGGC 12213 Query 39682 CCAGCCGATGAAGTCGGCGACGACGAGGAAGTACGACGGGAACCCCAT 39729 || ||||||||| |||| ||||||||| ||||| ||||| Sbjct 12214 GGAGTTGATGAAGTCCTGTACGATGAGGAAGTAGCCGGGGAAGCCCAT 12261 >seq112 Length=216842 Score = 80.6 bits (88), Expect = 9e-11 Identities = 110/154 (71%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 39508 GTCATCGAAGTCGATGTCCACGTCGGGCATGGAGACGCGCTCAGGGTTCAGGAACCGCTC 39567 ||| ||||||||| |||| | ||||||| ||||| ||| || || || ||||||||||| Sbjct 51939 GTCGTCGAAGTCGGTGTCGATATCGGGCAGGGAGATGCGGTCGGGATTGAGGAACCGCTC 51998 Query 39568 GAAGATGAGCCCGTGAGGGATGGGGTCCAGGTCGGTGATCCCGAGGGCGTACGCGGCCAG 39627 ||| | || ||| || ||||| | | ||||| |||||| || || ||| Sbjct 51999 GAACAGCAGGTCGTACTTGAGCGGGTCTATCTGTGTGATGCCGAGGCAATAGGCCACCAC 52058 Query 39628 CGAGCCAGCCGCAGAGCCACGCCCAGGGCCGACC 39661 ||| || || || ||||| || || || || ||| Sbjct 52059 CGAACCGGCTGCCGAGCCTCGTCCGGGTCCCACC 52092 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 160230297367850