Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alces_20americanus_20[genbank_20GCA_5F900089705.1_202017-06-20] 5,099 sequences; 74,234,735 total letters Query= NC_029013.1 Length=177688 Score E Sequences producing significant alignments: (Bits) Value seq2619 87.8 2e-12 seq1618 82.4 9e-11 >seq2619 Length=11042 Score = 87.8 bits (96), Expect = 2e-12 Identities = 174/254 (69%), Gaps = 4/254 (2%) Strand=Plus/Plus Query 78420 TTTGTAGATA--TGAACATCACCACCTGTCCATACCAGATCACCAACTTCGTACCCGCAA 78477 |||| | ||| |||||||| || || ||||| || | ||||||||| || |||| Sbjct 2311 TTTGAATATAAGTGAACATCTCCGCCGGTCCAAACAAAATCACCAACATCAAGATCGCAC 2370 Query 78478 ATATCAGCGATAATATGCGTCAGGAGAGCGTAGGAGGCGATATTGAACGGCAACCCTAAG 78537 | || || ||||| || || ||||| || || |||||||| || ||| | ||| Sbjct 2371 TGCTGCGCCATCATATGAGTAAGAAGAGCATAACTAGCAATATTGAAAGG-AACACCAAG 2429 Query 78538 AA-GACATCAACCGAACGCTGATACCACTGTAGAGACAGTTTACCGTTGATTACGACGAA 78596 || ||||||| ||||||||| |||| ||| | ||| || | ||| || Sbjct 2430 AAAGACATCACAGCTTCGCTGATACAACTGGCAAGATAATTTGTTATTAACTACATAAAA 2489 Query 78597 CTGGAAGAAACAGTGACACGGACGCAATGCCATTTTATCCAGATCAACAGGGTTCCATGC 78656 |||||| | | ||||| ||| |||||||| ||||| | || | | ||||| || Sbjct 2490 CTGGAAAAGAGCATGACAAGGAGCTAATGCCATCTTATCAATTTCTCCGGCATTCCAGGC 2549 Query 78657 GGAAACGATGATCC 78670 ||||||||||||| Sbjct 2550 TGAAACGATGATCC 2563 >seq1618 Length=17866 Score = 82.4 bits (90), Expect = 9e-11 Identities = 114/160 (71%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 78505 GCGTAGGAGGCGATATTGAACGGCAACCCTAAGAAGACATCAACCGAACGCTGATACCAC 78564 ||||| ||| ||||||||||||| || || || | |||| ||||||| || || | Sbjct 9229 GCGTAACTGGCTATATTGAACGGCACTCCCAAAAAAATATCAGCCGAACGTTGGTATAGC 9288 Query 78565 TGTAGAGACAGTTTACCGTTGATTACGACGAACTGGAAGAAACAGTGACACGGACGCAAT 78624 || || || |||| | | | || |||||| |||| || ||||| ||| ||||| Sbjct 9289 TGACAGGAAAGACTACCTTCGCTCACATTGAACTGAAAGAGGCAATGACAGGGAGGCAAT 9348 Query 78625 GCCATTTTATCCAGATCAACAGGGTTCCATGCGGAAACGA 78664 ||||| | || | ||| ||||||||||||| | |||| Sbjct 9349 GCCATATCTTCTATCTCAGCAGGGTTCCATGCTGTGACGA 9388 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 568437366913920