Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alces_20americanus_20[genbank_20GCA_5F900089705.1_202017-06-20] 5,099 sequences; 74,234,735 total letters Query= NC_029073.1 Length=141298 Score E Sequences producing significant alignments: (Bits) Value seq1727 172 5e-38 >seq1727 Length=201814 Score = 172 bits (190), Expect = 5e-38 Identities = 467/707 (66%), Gaps = 6/707 (1%) Strand=Plus/Plus Query 48739 TTTCCCACTTCATATCCTAATGGCTGATTCATATCTGTAATGACTGCAATTGTTTTTCGA 48798 ||||| ||| |||| ||||| |||| | ||||| |||| | |||| | ||||| | Sbjct 169387 TTTCCAACTGCATAGCCTAAAGGCTCGTCCATATTGGTAAGAATTGCAGCTATTTTTTTA 169446 Query 48799 TTCAGAT-TTTTTCCAATATCAACCATTTCTTGTGCTAATGCTTTAG-AGTCTTCTAATG 48856 | ||| | ||||||| ||||||||||| || ||| ||| | || || || | | Sbjct 169447 T-CAGCTCTTTTTCCTATATCAACCATGGATTTTGCCAATTCAAGAGCAGACTCTTTGT- 169504 Query 48857 TTTTCATAAATGCTCCATTTCCTGTTTTAACATCTAATACAATTGCATCTGCTCCCATTG 48916 |||||||||| || |||| || | || || | ||||| ||||| | || || Sbjct 169505 TTTTCATAAAAGCCCCATCCCCAACGGTTACGTCAAGCACAATGGCATCAGTGCCGGCTG 169564 Query 48917 CGAtttttttACTCATAATGCTACTAGCAATTAATGGAATTGAATTAACTGTTCCAGTAA 48976 | | |||||| |||||| || | || | || || || |||||| | || | Sbjct 169565 CAAGCTTTTTAGACATAATAGAACCGGTGATAAGTGAGATCTCATCAACTGTAGCTGTTA 169624 Query 48977 CATCGCGTAATGCATATAATTTTTTGTCGGCAGGCACTAAAATTCCACTTTGTCCAACTA 49036 |||| | | ||||| | ||| ||||||||||| |||| || | || || | Sbjct 169625 CATCTCTAAGGGCATAGAGTTTCTTGTCGGCAGGTGCTAAGTTTTTAGACTGACCCGTAA 169684 Query 49037 ATGCGATTTT-ATGTGTATTAACTTGATTAATAAATTGTTCTCTTGTTAATTCTACGTTA 49095 ||| || || ||| | |||||| ||||||||||| || ||| ||| | || ||| Sbjct 169685 CTGCTATCTTGATG-GAATTAACCTGATTAATAAACTGCTCTTCTGTAAGAGAGACATTA 169743 Query 49096 AAGCCTTGTATAGATTCTAATTTGTCAATTGTTCCTCCTGTGTGCCCTAAACCTCTACCT 49155 || || | | || |||||||||||||| || || || || || || || ||||| || Sbjct 169744 AACCCCGGAAAAGCCTCTAATTTGTCAATGGTGCCACCGGTATGACCCAACCCTCTTCCA 169803 Query 49156 GACATTTTAGCAACAGGAATACCCAAAGAAGCAACCAATGGAGCAACGATTAAACTAATT 49215 ||| || || ||||| | ||| | ||| || | | ||| ||| | | ||| Sbjct 169804 CTCATCTTGGCCACAGGTACACCTATAGATGCGATGATAGGACCAAGCACAAGTGTAACC 169863 Query 49216 TTATCGCCGACTCCACCTGTGGAATGTTTATCTACTTTTACACCTTCGATTTTTGATAGG 49275 || || || || ||||| || ||||| ||||| | |||||| || || || || | Sbjct 169864 TTGTCCCCTACGCCACCCGTAGAATGCTTATCGATTTTTACTCCATCTATCGAAGACAAA 169923 Query 49276 TCAATTGTTTCACCAGAATTAATCATGGCATTAGTTAAGGCAGAGATTTCTTCTTTAGAC 49335 || | | ||||| |||| |||| || |||| | || | |||| | | Sbjct 169924 TCCAAAATATCACCGGAATCTCTCATTGCCATAGTGAGATCATAACGTTCTCTGACATTC 169983 Query 49336 ATGCCATTGAAATAAATTGCCATTAACATAGAAGCCATTTGATAATCAGGAATGTCGCCG 49395 || ||||| ||||| || ||||| || | | | || ||||| ||||| || ||||| Sbjct 169984 ATTCCATTAAAATATATAGCCATCAAAAGTGCGGAAATCTGATAGTCAGGTATCTCGCCT 170043 Query 49396 TTCGTGTAACCGCGGATGATAAAATCAATTTCTTCTTTTGAAAGCTC 49442 ||||| |||||| || || || ||||||||| ||| ||| || Sbjct 170044 TTCGTATAACCGTCAATCATCTCATAGATTTCTTCTGTTGTAAGTTC 170090 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451996789018320