Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alces_20americanus_20[genbank_20GCA_5F900089705.1_202017-06-20] 5,099 sequences; 74,234,735 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq3719 113 4e-20 seq2451 95.1 1e-14 seq4293 87.8 2e-12 >seq3719 Length=49728 Score = 113 bits (124), Expect = 4e-20 Identities = 180/256 (70%), Gaps = 2/256 (1%) Strand=Plus/Plus Query 6512 GGTCGGGGCTCTCGTTGCAGCTGGATCCGGAGCCGCTCGATGTGGTTCAGGTAGATATGC 6571 ||||| ||||||||| ||||| | | | | | ||||||||||| |||||||||| Sbjct 23584 GGTCGCGGCTCTCGTGAGAGCTGCAGCTTCACCTGTTCGATGTGGTTGTTGTAGATATGC 23643 Query 6572 GCATCCCCCAACGTATGCACCAGCTCCCCAGGAACCA-ACCCCACGACATGAGCGATCAT 6630 | || || || ||||| || | || || || | | | | ||| || ||||| ||||| Sbjct 23644 ACGTCGCCGAAGGTATGGACGAAATCACCGGGTTCGAGATCGCAC-ACCTGAGCCATCAT 23702 Query 6631 GTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCCATGTCTCCCGA 6690 || ||||| | || ||| |||||||||||||| || | || ||| |||| Sbjct 23703 CATGGTCAGCAGCGAATACGAAGCGATGTTGAACGGCACGCCGAGAAACACGTCGGCCGA 23762 Query 6691 TCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGGCAGAGGGTGTG 6750 ||||| || |||||||| ||||||| || || || || ||||| ||| ||| || || Sbjct 23763 GCGTTGGTAAAGCTGGCACGACAGCTTGCCGTTTGCCACATAGAACTGGAAGAAGGCATG 23822 Query 6751 GCACGGGGGGAGCGCC 6766 || || || || ||| Sbjct 23823 ACAGGGAGGCAGTGCC 23838 Score = 113 bits (124), Expect = 4e-20 Identities = 180/256 (70%), Gaps = 2/256 (1%) Strand=Plus/Minus Query 34579 GGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAATGGGGAGCTGTCCTG 34638 ||| || || || || || || ||| ||| ||||| || || || || ||||||| || Sbjct 23838 GGCACTGCCTCCCTGTCATGCCTTCTTCCAGTTCTATGTGGCAAACGGCAAGCTGTCGTG 23779 Query 34639 CCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCTAGTTA 34698 |||||| || ||||| |||| ||| || | || |||||||||||||| ||| || Sbjct 23778 CCAGCTTTACCAACGCTCGGCCGACGTGTTTCTCGGCGTGCCGTTCAACATCGCTTCGTA 23719 Query 34699 CGCTCTGCTCACGTACATGATCGCTCATGTCGTGGGGT-TGGTTCCTGGGGAGCTGGTGC 34757 | ||||| || ||||| ||||| || ||| | | | | || || || | || | Sbjct 23718 TTCGCTGCTGACCATGATGATGGCTCAGGT-GTGCGATCTCGAACCCGGTGATTTCGTCC 23660 Query 34758 ATACGTTGGGGGATGCGCATATCTACCTGAACCACATCGAGCGGCTCCGGATCCAGCTGC 34817 |||| || || || | |||||||||| ||||||||||| | | | | | ||||| Sbjct 23659 ATACCTTCGGCGACGTGCATATCTACAACAACCACATCGAACAGGTGAAGCTGCAGCTCT 23600 Query 34818 AACGAGAGCCCCGACC 34833 ||||||||| ||||| Sbjct 23599 CACGAGAGCCGCGACC 23584 >seq2451 Length=31860 Score = 95.1 bits (104), Expect = 1e-14 Identities = 154/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 6548 TCGATGTGGTTCAGGTAGATATGCGCATCCCCCAACGTATGCACCAGCTCCCCAGGAACC 6607 |||| ||||||| ||| | |||| ||| ||| ||| ||||| | ||| || || | Sbjct 18266 TCGAAGTGGTTCCTGTACAGGTGCGTATCTCCCGTCGTGTGCACGAACTCTCCGGGCTGC 18325 Query 6608 AACCCCACGACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGC 6667 | || ||| || || |||||| ||| ||||| ||||| || |||||||| || Sbjct 18326 AGGCCGGTGACCTGGGCCATCATGAGCGTAAGCAGCGCGTAGGAGGCTATGTTGAAGGGA 18385 Query 6668 ACCCCTAACCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCG 6727 || || | || ||| | || ||||| |||||||||||||| | || || Sbjct 18386 ACGCCCAGGAACACGTCGGCGCTGCGCTGATACAGCTGGCAGGACAGTTTTCCGCCGGCC 18445 Query 6728 ACGTAGAATTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATC 6769 |||||||| ||| | ||| |||||| ||||| || |||||| Sbjct 18446 ACGTAGAACTGGAACAGGCAGTGGCAGGGGGGCAGGGCCATC 18487 Score = 95.1 bits (104), Expect = 1e-14 Identities = 154/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 34576 GATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAATGGGGAGCTGTC 34635 |||||| || ||||| |||||| ||| | ||| |||||||| || || | ||||| Sbjct 18487 GATGGCCCTGCCCCCCTGCCACTGCCTGTTCCAGTTCTACGTGGCCGGCGGAAAACTGTC 18428 Query 34636 CTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCTAG 34695 ||||||||| ||||| || | ||| || | || || || |||||||| || Sbjct 18427 CTGCCAGCTGTATCAGCGCAGCGCCGACGTGTTCCTGGGCGTTCCCTTCAACATAGCCTC 18368 Query 34696 TTACGCTCTGCTCACGTACATGATCGCTCATGTCGTGGGGTTGGTTCCTGGGGAGCTGGT 34755 ||||| ||||| ||| |||||| || || ||| || || || || ||| | || Sbjct 18367 CTACGCGCTGCTTACGCTCATGATGGCCCAGGTCACCGGCCTGCAGCCCGGAGAGTTCGT 18308 Query 34756 GCATACGTTGGGGGATGCGCATATCTACCTGAACCACATCGA 34797 ||| ||| ||| ||| |||| | ||| ||||||| |||| Sbjct 18307 GCACACGACGGGAGATACGCACCTGTACAGGAACCACTTCGA 18266 >seq4293 Length=67978 Score = 87.8 bits (96), Expect = 2e-12 Identities = 185/269 (69%), Gaps = 8/269 (3%) Strand=Plus/Plus Query 6506 GGGAACGGTCGGGGCTCTCGTTGCAGCTGGA--TCCGGAGCCGCTCGATGTGGTTCAGGT 6563 |||| ||| || ||||| || ||||||| ||| | | | |||| ||||| |||| Sbjct 67165 GGGAGCGGACGCGGCTCGCGGGTGAGCTGGAGGTCC--ACCTGGTCGAAATGGTTGAGGT 67222 Query 6564 AGATATGCGCATCCCCCAACGTATGCACCAGCTCCCCAGGAACCAACCC-CACGACATGA 6622 |||| || | || ||| || || | | || || ||| ||| ||| ||| | || Sbjct 67223 AGATGTGGGTGTCGCCCGTGGTGTGGATGAATTCGCCCGGAGCCAGCCCGCACTCC-TGT 67281 Query 6623 GCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCCATG 6682 || ||||| |||||||| | ||| || |||||||| ||||| || | || Sbjct 67282 GCTATCATCATGGTGAGCAGCGAGTAGGAGGCGATGTTGAAGGGCACGCCCAGGAAGGTG 67341 Query 6683 TCTCCCGAT-CGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGGCA 6741 || | || | || || |||||||||||| || || | ||| || ||||| ||| | Sbjct 67342 TC-CGCGCTGCGCTGGTAGAGCTGGCAGCTGAGGCGGCCGTCCGCCACATAGAACTGGAA 67400 Query 6742 GAGGGTGTGGCACGGGGGGAGCGCCATCA 6770 |||| |||||||||||| |||||||||| Sbjct 67401 GAGGCAGTGGCACGGGGGAAGCGCCATCA 67429 Score = 87.8 bits (96), Expect = 2e-12 Identities = 185/269 (69%), Gaps = 8/269 (3%) Strand=Plus/Minus Query 34575 TGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAATGGGGAGCTGT 34634 |||||||||| |||||||||||| ||||| ||| ||||| || ||| | || || Sbjct 67429 TGATGGCGCTTCCCCCGTGCCACTGCCTCTTCCAGTTCTATGTGGCGGACGGCCGCCTCA 67370 Query 34635 CCTGCCAGCTCTATCAACG-ATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCT 34693 |||||||||||| || || | || | |||| | || ||||| |||||||| || Sbjct 67369 GCTGCCAGCTCTACCAGCGCAGCGCG-GACACCTTCCTGGGCGTGCCCTTCAACATCGCC 67311 Query 34694 AGTTACGCTCTGCTCACGTACATGATCGCTCATGTCGTG-GGGTTGGTTCCTGGGGAGCT 34752 ||| | |||||||| ||||| || || | ||| ||| ||| ||| || || | Sbjct 67310 TCCTACTCGCTGCTCACCATGATGATAGCACA-GGAGTGCGGGCTGGCTCCGGGCGAATT 67252 Query 34753 GGTGCATACGTTGGGGGATGCGCATATCTACCTGAACCACATCGAGCGGCTCCGGA--TC 34810 | || || ||| || | || |||||||| ||||| |||| | | | ||| || Sbjct 67251 CATCCACACCACGGGCGACACCCACATCTACCTCAACCATTTCGACCAGGT--GGACCTC 67194 Query 34811 CAGCTGCAACGAGAGCCCCGACCGTTCCC 34839 ||||| || ||||| || ||| |||| Sbjct 67193 CAGCTCACCCGCGAGCCGCGTCCGCTCCC 67165 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448233828875280