Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alces_20americanus_20[genbank_20GCA_5F900089705.1_202017-06-20] 5,099 sequences; 74,234,735 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq1729 104 6e-17 seq4910 86.0 1e-11 seq4006 86.0 1e-11 seq3869 84.2 5e-11 >seq1729 Length=106764 Score = 104 bits (114), Expect = 6e-17 Identities = 87/107 (81%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 4474 ATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACCTGCT 4533 || |||||||| ||||||||||||||||||||||| || || ||||| ||||||||||| Sbjct 47395 ATCTGACCATCTGTAATAGAGATAACATTTGTAGGAATGTATGCAGATACATCACCTGCC 47454 Query 4534 TGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACCAAAATT 4580 ||||| |||| || ||| | || || || || || ||||| || || Sbjct 47455 TGTGTCTCGATAATAGGAAGTGCGGTAAGAGAACCGCCACCCAACTT 47501 >seq4910 Length=11294 Score = 86.0 bits (94), Expect = 1e-11 Identities = 96/127 (76%), Gaps = 1/127 (1%) Strand=Plus/Plus Query 7737 GGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCTTATACAATCTTC 7796 |||||| ||| | |||| ||| ||||||||||||| ||||||||||| | | | | Sbjct 1244 GGTAAGGTTCCTCGCGTACCATCGAATTAAACCACATGCTCCACCGCTTGTGCGGGCCCC 1303 Query 7797 CGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGGAATATTTA-CGCG 7855 ||||| || |||||||||| | |||||||| | || | | |||| || | ||| |||| Sbjct 1304 CGTCAATTCCTTTGAGTTTCACCCTTGCGGGCATACTCCCCAGGCGGCGCACTTATCGCG 1363 Query 7856 TTAGCTT 7862 || |||| Sbjct 1364 TTTGCTT 1370 >seq4006 Length=58233 Score = 86.0 bits (94), Expect = 1e-11 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 4470 GAATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACC 4529 |||||| || || || ||||| ||||| || ||||| ||||| ||||||||||| ||||| Sbjct 41309 GAATATCTGTCCGTCGGTAATTGAGATTACGTTTGTTGGGATGTAAGCAGAAACGTCACC 41368 Query 4530 TGCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACC 4574 || || ||||||| || |||| ||| || || || || || || Sbjct 41369 AGCCTGAGTTTCGATAATTGGTAGGGCAGTGAGCGAACCTCCGCC 41413 >seq3869 Length=139515 Score = 84.2 bits (92), Expect = 5e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 4474 ATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACCTGCT 4533 || |||||||| ||||| ||||| |||||||||||||| || ||||| ||||||||||| Sbjct 47271 ATCTGACCATCTGTAATTGAGATGACATTTGTAGGGATGTACGCAGATACATCACCTGCC 47330 Query 4534 TGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACC 4574 || || || | || || | ||||| || || || || || Sbjct 47331 TGGGTCTCAATAATCGGGAGTGCTGTAAGAGAACCGCCTCC 47371 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192453290818706