Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alces_20americanus_20[genbank_20GCA_5F900089705.1_202017-06-20] 5,099 sequences; 74,234,735 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq4688 125 6e-24 seq2451 118 9e-22 seq4293 109 4e-19 seq127 105 5e-18 seq3719 96.9 3e-15 seq2324 82.4 6e-11 >seq4688 Length=13253 Score = 125 bits (138), Expect = 6e-24 Identities = 239/344 (69%), Gaps = 16/344 (5%) Strand=Plus/Minus Query 29611 GGGAAAGGGTCTGGGCTCCCT-CTCGAGCTGAATCCTCAGCG----GTTCCACGTGGTCA 29665 ||| | ||| |||||||| | ||| ||||| ||| ||| | || | ||||| Sbjct 4028 GGGCAGGGGCCTGGGCTCGCGGCTC-AGCTG----CTCTGCGACCTGGTCGAAGTGGTTG 3974 Query 29666 AGGTAGACGTGAGCATCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACG 29725 ||||||| ||| | || || | || |||||| ||||| || || | || || ||||| Sbjct 3973 AGGTAGATGTGGGTGTCGCCGAAGGAGTGGACGAACTCGCCGGGCTGCAGGCCCGTGACC 3914 Query 29726 TGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGCACCCCGAGCCCC 29785 || || ||||| |||||||| | ||| ||||||||| |||||||| ||||| Sbjct 3913 TGTGCGATCATCATGGTGAGGAGGGCATAGGAGGCGATGTTGAAGGGCACTCCGAGGAAG 3854 Query 29786 ATGTC--CCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTCACGTAAAACT 29843 | ||| | ||| | ||||||||||||||| || |||||| ||||| |||| Sbjct 3853 ACGTCGGCGCTG--CGCTGGTAGAGCTGGCAGCTCAGGCGGCCGTCGGCTACGTAGAACT 3796 Query 29844 GACACATGGCA-TGGCACGGAGGAAGGGCCATGAGACCCAAGTCTTTGGGGTTCCAGGCA 29902 | ||| |||| ||||| || || |||||||| | | ||| ||||||||||| Sbjct 3795 GGAACA-GGCAGTGGCAGGGCGGGAGGGCCATCTTGTCGATGTCGGCCGGGTTCCAGGCG 3737 Query 29903 CACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTC 29946 || |||| |||||| | | || ||||||| | |||||||| Sbjct 3736 CAGACGAGGATGCGGCGGGAGTCGGGGTTGTGCTCAATGAGGTC 3693 >seq2451 Length=31860 Score = 118 bits (130), Expect = 9e-22 Identities = 171/237 (72%), Gaps = 6/237 (3%) Strand=Plus/Plus Query 29668 GTAGACGTGAGCATCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTG 29727 ||| | ||| | ||||||| ||||| || |||||||| || | || |||||||| || Sbjct 18280 GTACAGGTGCGTATCTCCCGTCGTGTGCACGAACTCTCCGGGCTGCAGGCCGGTGACCTG 18339 Query 29728 AGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGCACCCCGAGCCCCAT 29787 ||||||||| ||| || || | |||| ||| ||||| ||||| || || || || Sbjct 18340 GGCCATCATGAGCGTAAGCAGCGCGTAGGAGGCTATGTTGAAGGGAACGCCCAGGAACAC 18399 Query 29788 GTC--CCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTCACGTAAAACTGA 29845 ||| | ||| | ||| || |||||||| || || | |||| || |||||| ||||| Sbjct 18400 GTCGGCGCTG--CGCTGATACAGCTGGCAGGACAGTTTTCCGCCGGCCACGTAGAACTGG 18457 Query 29846 CACATGGCA-TGGCACGGAGGAAGGGCCATGAGACCCAAGTCTTTGGGGTTCCAGGC 29901 ||| |||| ||||| || || |||||||| | ||| || ||||||||||| Sbjct 18458 AACA-GGCAGTGGCAGGGGGGCAGGGCCATCTGGTCCACCTCGGCCGGGTTCCAGGC 18513 >seq4293 Length=67978 Score = 109 bits (120), Expect = 4e-19 Identities = 211/309 (68%), Gaps = 2/309 (1%) Strand=Plus/Plus Query 29660 TGGTCAAGGTAGACGTGAGCATCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCG 29719 |||| ||||||| ||| | || ||| |||||||| || || ||||| | |||||| Sbjct 67213 TGGTTGAGGTAGATGTGGGTGTCGCCCGTGGTGTGGATGAATTCGCCCGGAGCCAGCCCG 67272 Query 29720 GTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGCACCCCG 29779 | || || ||||| ||||| || |||||| ||||||||| |||||||| || Sbjct 67273 CACTCCTGTGCTATCATCATGGTGAGCAGCGAGTAGGAGGCGATGTTGAAGGGCACGCCC 67332 Query 29780 AGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTCACGTAA 29839 || ||||| | | ||||||||||||||| ||| ||||| ||| || Sbjct 67333 AGGAAGGTGTCCGCGCTGCGCTGGTAGAGCTGGCAGCTGAGGCGGCCGTCCGCCACATAG 67392 Query 29840 AACTGACACATGGCA-TGGCACGGAGGAAGGGCCATGAGACCCAAGTCTTTGGGGTTCCA 29898 ||||| | | |||| |||||||| ||||| ||||| | ||| || ||||||||| Sbjct 67393 AACTGGAAGA-GGCAGTGGCACGGGGGAAGCGCCATCATGTCCACCTCGCCGGGGTTCCA 67451 Query 29899 GGCACACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTG 29958 || | ||||||| ||| | | || || ||| | | || |||| | | | || | Sbjct 67452 TGCGGATACGATGAGGCGGCGGCTGTCCGGATTGCTTTTTATCTGGTCGATGACATTCTT 67511 Query 29959 CAGCTGATC 29967 |||||| || Sbjct 67512 CAGCTGGTC 67520 >seq127 Length=36082 Score = 105 bits (116), Expect = 5e-18 Identities = 157/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 29652 GTTCCACGTGGTCAAGGTAGACGTGAGCATCTCCCAGGGTGTGGACAAACTCTCCCGGTT 29711 |||||| ||||| ||||||| ||| | || || ||| |||| ||||| ||||||| Sbjct 865 GTTCCAAGTGGTTCAGGTAGAGGTGTGTGTCGCCGGTGGTATGGATGAACTCACCCGGTT 924 Query 29712 CTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGG 29771 || || || || |||||||||||| | || || | || ||| ||||| |||| Sbjct 925 TCAGTCCCGTCACCTGAGCCATCATGAGCAGCAGCAGGGCATACGAGGCAATGTTGAAGG 984 Query 29772 GCACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGC 29831 | || ||||| | || | || | |||||||||||| ||| || || |||| | Sbjct 985 GAACGCCGAGGAAGGTATCGGCCGAACGCTGGTAGAGCTGCAGCGAAAGTTCACCGTTGG 1044 Query 29832 TCACGTAAAACTGACACATGGCATGGCACGGAGGAAGGGCCAT 29874 || || ||||| |||||| |||||| || ||||| ||||| Sbjct 1045 CAACATAGAACTGGAACATGGTATGGCAGGGCGGAAGCGCCAT 1087 >seq3719 Length=49728 Score = 96.9 bits (106), Expect = 3e-15 Identities = 164/238 (69%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 29635 GAGCTGAATCCTCAGCGGTTCCACGTGGTCAAGGTAGACGTGAGCATCTCCCAGGGTGTG 29694 |||||| | | ||| | |||| | ||||| ||||| || | || || | ||| || Sbjct 23601 GAGCTGCAGCTTCACCTGTTCGATGTGGTTGTTGTAGATATGCACGTCGCCGAAGGTATG 23660 Query 29695 GACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTA 29754 ||| || || || ||||| || || || ||||||||||| || || || || || Sbjct 23661 GACGAAATCACCGGGTTCGAGATCGCACACCTGAGCCATCATCATGGTCAGCAGCGAATA 23720 Query 29755 GCTGGCGATGTTAAAGGGCACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCA 29814 |||||||| || ||||| ||||| || ||| | || | ||||| |||||||| Sbjct 23721 CGAAGCGATGTTGAACGGCACGCCGAGAAACACGTCGGCCGAGCGTTGGTAAAGCTGGCA 23780 Query 29815 CGAGAGCTCTCCGTCGCTCACGTAAAACTGACACATGGCATGGCACGGAGGAAGGGCC 29872 ||| |||| |||| ||| || ||||| | | |||||| || ||||| || ||| Sbjct 23781 CGACAGCTTGCCGTTTGCCACATAGAACTGGAAGAAGGCATGACAGGGAGGCAGTGCC 23838 >seq2324 Length=83463 Score = 82.4 bits (90), Expect = 6e-11 Identities = 169/244 (69%), Gaps = 8/244 (3%) Strand=Plus/Plus Query 29635 GAGCTGAATCCTC-AGCGGTTCCACGTGGTCAAGGTAGACGTGAGCATCTCCCAGGGTGT 29693 |||||| ||||| | | | |||| ||||| ||||||| ||| | || || ||||| Sbjct 68148 GAGCTGT-TCCTCCACCTGCTCCATGTGGTTGAGGTAGATGTGGGTGTCGCCTGTGGTGT 68206 Query 29694 GGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGT 29753 ||| || || ||||| |||||| | || || ||||| || | || || | Sbjct 68207 GGATGAATTCGCCCGGCCGGAGCCCGCATTCCTGCGCTATCATCATGGTTAACAGCGAAT 68266 Query 29754 AGCTGGCGATGTTAAAGGGCACCCCGAGCCCCATGTC--CCCTGACCTCTGGTAGAGCTG 29811 | |||||||| || ||||| ||||| |||| | ||| | |||||||||||| Sbjct 68267 ACGACGCGATGTTGAACGGCACGCCGAGGAAAGTGTCGGCGCTG--CGCTGGTAGAGCTG 68324 Query 29812 GCACGAGAGCTCTCCGTCGCTCACGTAAAACTGACACATGGCA-TGGCACGGAGGAAGGG 29870 ||||||||| | || || |||||| ||||| ||| |||| ||||| || || || | Sbjct 68325 GCACGAGAGTTTCCCCTCCGCCACGTAGAACTGGAACA-GGCAGTGGCAGGGGGGCAGCG 68383 Query 29871 CCAT 29874 |||| Sbjct 68384 CCAT 68387 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406137959368714