Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alces_20americanus_20[genbank_20GCA_5F900089705.1_202017-06-20] 5,099 sequences; 74,234,735 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq4688 118 8e-22 seq4293 104 2e-17 seq127 100 2e-16 seq2451 93.3 3e-14 >seq4688 Length=13253 Score = 118 bits (130), Expect = 8e-22 Identities = 232/338 (69%), Gaps = 4/338 (1%) Strand=Plus/Minus Query 27105 GGGAAAGGGTCTGGGCTCCCT-CTCGAGCTGAGTCTTC-AGCGGTTCCACGTGATCCAGG 27162 ||| | ||| |||||||| | ||| ||||| ||| | | | | || | ||| | ||| Sbjct 4028 GGGCAGGGGCCTGGGCTCGCGGCTC-AGCTGC-TCTGCGACCTGGTCGAAGTGGTTGAGG 3971 Query 27163 TAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGA 27222 |||| ||| | ||| || | || |||||| ||||| || || | || || ||||| || Sbjct 3970 TAGATGTGGGTGTCGCCGAAGGAGTGGACGAACTCGCCGGGCTGCAGGCCCGTGACCTGT 3911 Query 27223 GCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATG 27282 || ||||| |||||||| | ||| ||||||||| ||||| || ||||| | | Sbjct 3910 GCGATCATCATGGTGAGGAGGGCATAGGAGGCGATGTTGAAGGGCACTCCGAGGAAGACG 3851 Query 27283 TCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTTACGTAAAACTGACAT 27342 || | | |||||||||||| || || || ||| |||||| ||||| | Sbjct 3850 TCGGCGCTGCGCTGGTAGAGCTGGCAGCTCAGGCGGCCGTCGGCTACGTAGAACTGGAAC 3791 Query 27343 ATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACG 27402 | | |||||| || || || ||||| | | | ||| |||||||||||||| ||| Sbjct 3790 AGGCAGTGGCAGGGCGGGAGGGCCATCTTGTCGATGTCGGCCGGGTTCCAGGCGCAGACG 3731 Query 27403 ATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTC 27440 | |||||| | | || ||||||| | |||||||| Sbjct 3730 AGGATGCGGCGGGAGTCGGGGTTGTGCTCAATGAGGTC 3693 >seq4293 Length=67978 Score = 104 bits (114), Expect = 2e-17 Identities = 204/302 (68%), Gaps = 0/302 (0%) Strand=Plus/Plus Query 27160 AGGTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACG 27219 ||||||| ||| | ||| ||| |||||||| || || ||||| | |||||| | Sbjct 67219 AGGTAGATGTGGGTGTCGCCCGTGGTGTGGATGAATTCGCCCGGAGCCAGCCCGCACTCC 67278 Query 27220 TGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCC 27279 || || ||||| ||||| || |||||| ||||||||| ||||| || || || Sbjct 67279 TGTGCTATCATCATGGTGAGCAGCGAGTAGGAGGCGATGTTGAAGGGCACGCCCAGGAAG 67338 Query 27280 ATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTTACGTAAAACTGA 27339 ||||| | | |||||||||||| || ||| || || || || ||||| Sbjct 67339 GTGTCCGCGCTGCGCTGGTAGAGCTGGCAGCTGAGGCGGCCGTCCGCCACATAGAACTGG 67398 Query 27340 CATATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCAC 27399 | | | ||||||||| ||||| ||||| | | ||| || ||||||||| ||| | Sbjct 67399 AAGAGGCAGTGGCACGGGGGAAGCGCCATCATGTCCACCTCGCCGGGGTTCCATGCGGAT 67458 Query 27400 ACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGA 27459 ||||||| ||| | | || || ||| | | || |||| | | | || | |||||| Sbjct 67459 ACGATGAGGCGGCGGCTGTCCGGATTGCTTTTTATCTGGTCGATGACATTCTTCAGCTGG 67518 Query 27460 TC 27461 || Sbjct 67519 TC 67520 >seq127 Length=36082 Score = 100 bits (110), Expect = 2e-16 Identities = 156/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 27146 GTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTT 27205 |||||| ||| | |||||||| ||| | ||| || ||| |||| ||||| ||||||| Sbjct 865 GTTCCAAGTGGTTCAGGTAGAGGTGTGTGTCGCCGGTGGTATGGATGAACTCACCCGGTT 924 Query 27206 CTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGG 27265 || || || || |||||||||||| | || || | || ||| ||||| |||| Sbjct 925 TCAGTCCCGTCACCTGAGCCATCATGAGCAGCAGCAGGGCATACGAGGCAATGTTGAAGG 984 Query 27266 GTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGC 27325 | || ||||| | || |||| | |||||||||||| ||| || || || | | Sbjct 985 GAACGCCGAGGAAGGTATCGGCCGAACGCTGGTAGAGCTGCAGCGAAAGTTCACCGTTGG 1044 Query 27326 TTACGTAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCAT 27368 || || ||||| | |||| ||||| || ||||| ||||| Sbjct 1045 CAACATAGAACTGGAACATGGTATGGCAGGGCGGAAGCGCCAT 1087 >seq2451 Length=31860 Score = 93.3 bits (102), Expect = 3e-14 Identities = 161/234 (69%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 27162 GTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTG 27221 ||| | ||| | |||||| ||||| || |||||||| || | || |||||||| || Sbjct 18280 GTACAGGTGCGTATCTCCCGTCGTGTGCACGAACTCTCCGGGCTGCAGGCCGGTGACCTG 18339 Query 27222 AGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCAT 27281 ||||||||| ||| || || | |||| ||| ||||| ||||| || || || || Sbjct 18340 GGCCATCATGAGCGTAAGCAGCGCGTAGGAGGCTATGTTGAAGGGAACGCCCAGGAACAC 18399 Query 27282 GTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTTACGTAAAACTGACA 27341 ||| | | ||| || ||||| || || || | ||| || ||||| ||||| | Sbjct 18400 GTCGGCGCTGCGCTGATACAGCTGGCAGGACAGTTTTCCGCCGGCCACGTAGAACTGGAA 18459 Query 27342 TATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGC 27395 | | |||||| || || || ||||| || ||| || ||||||||||| Sbjct 18460 CAGGCAGTGGCAGGGGGGCAGGGCCATCTGGTCCACCTCGGCCGGGTTCCAGGC 18513 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369484237321469