Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alces_20americanus_20[genbank_20GCA_5F900089705.1_202017-06-20] 5,099 sequences; 74,234,735 total letters Query= NC_030929.1 Length=49033 Score E Sequences producing significant alignments: (Bits) Value seq818 96.9 1e-15 seq4653 91.5 5e-14 seq2457 84.2 7e-12 >seq818 Length=8209 Score = 96.9 bits (106), Expect = 1e-15 Identities = 95/123 (77%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 30318 GCGGTTTCCACCTAACGGGATGTAAAGGTAGTCTCGCAGATAGCGGCTTAGGGTCATGTG 30377 ||||||||| || | ||||||||| || ||||| ||||| |||| || |||||||| Sbjct 4296 GCGGTTTCCGCCCAGCGGGATGTATAGATAGTCACGCAGCCAGCGCGAAAGCGTCATGTG 4355 Query 30378 CCAACGCCGCCAGAAATCTTGAATATCAAGCGCCTTGTAGGGCGAGTTGAAGTTTATTGG 30437 ||| || |||||||| | || | | ||| |||||||| ||||| |||||||| |||| Sbjct 4356 CCAGCGGCGCCAGAACTGCTGCGTGTTAAGTGCCTTGTACGGCGAATTGAAGTTCTTTGG 4415 Query 30438 GAG 30440 || Sbjct 4416 CAG 4418 >seq4653 Length=71803 Score = 91.5 bits (100), Expect = 5e-14 Identities = 128/180 (71%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 30318 GCGGTTTCCACCTAACGGGATGTAAAGGTAGTCTCGCAGATAGCGGCTTAGGGTCATGTG 30377 |||||| || || | || || || |||||| |||||| ||||||| || | |||||| Sbjct 50833 GCGGTTGCCTCCCAGGGGAATATAGAGGTAGGATCGCAGCCAGCGGCTCAGCGACATGTG 50774 Query 30378 CCAACGCCGCCAGAAATCTTGAATATCAAGCGCCTTGTAGGGCGAGTTGAAGTTTATTGG 30437 ||| || ||||||||||| || | | ||||||||||| ||||||||||| | || Sbjct 50773 CCAGCGGCGCCAGAAATCCTGCGGGTTGGGAGCCTTGTAGGGGGAGTTGAAGTTGGTGGG 50714 Query 30438 GAGCCAAATGTTAAAGAGAAGGGCCGCGCCTATGGCCATGTCGCAGTAACCGCTAAAGTC 30497 || | | | | || | ||| |||| ||||| |||||| ||| ||| ||||| Sbjct 50713 AAGGTAGAAGCCCATCAGCATGGCGACGCCGATGGCTATGTCGGTGTAGCCGGAGAAGTC 50654 >seq2457 Length=24089 Score = 84.2 bits (92), Expect = 7e-12 Identities = 126/179 (70%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 30319 CGGTTTCCACCTAACGGGATGTAAAGGTAGTCTCGCAGATAGCGGCTTAGGGTCATGTGC 30378 ||||| || || | || ||||| |||||||| || || ||||| || ||||| ||| Sbjct 21385 CGGTTGCCGCCCAGGGGAATGTACAGGTAGTCCCGGAGCCAGCGGGAAAGCGTCATATGC 21326 Query 30379 CAACGCCGCCAGAAATCTTGAATATCAAGCGCCTTGTAGGGCGAGTTGAAGTTTATTGGG 30438 || || |||||||| | || | | | ||||||||||||||||| |||||| | || Sbjct 21325 CAGCGGCGCCAGAACTGCTGCGTGTTCACCGCCTTGTAGGGCGAGTCGAAGTTCTTGGGC 21266 Query 30439 AGCCAAATGTTAAAGAGAAGGGCCGCGCCTATGGCCATGTCGCAGTAACCGCTAAAGTC 30497 || ||| | | ||| | ||| |||| |||| ||||| ||| ||| ||||| Sbjct 21265 AGGTAAAAGCCCATGAGCATAGCCACGCCCGTGGCTATGTCTGTGTAGCCGGAGAAGTC 21207 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 156774506630810