Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alces_20americanus_20[genbank_20GCA_5F900089705.1_202017-06-20] 5,099 sequences; 74,234,735 total letters Query= NC_030953.1 Length=170650 Score E Sequences producing significant alignments: (Bits) Value seq2964 113 5e-20 seq2701 91.5 2e-13 >seq2964 Length=2227 Score = 113 bits (124), Expect = 5e-20 Identities = 491/762 (64%), Gaps = 21/762 (3%) Strand=Plus/Plus Query 160541 AATATCAGGATACATCCTTTTGCTTGCGCACTCTAAAGCAAGCTGCTTAATATCATAGTT 160600 |||||| |||||||| || ||| ||||| || | ||| |||| ||| ||||| ||||| Sbjct 1103 AATATCCGGATACATTCTCTTGGAGGCGCATTCAAGAGCCAGCTTCTTGATATCGTAGTT 1162 Query 160601 CGGATCGTCTTTATAAAGATTAACACCTTCTTCAA---CAAACATAACAAGCTTAGGGAA 160657 ||||| | | | | | || | || || | | |||||| | ||||||||||| Sbjct 1163 AGGATCACCCTCTTTACGGTTCAGTCCCTCCTTGATGGCAAACA---CCAGCTTAGGGAA 1219 Query 160658 AATAGGAGTTATCCCATCACGACCAAGACCTTTAATACGATTTTTCAGAATTGCTTTCTG 160717 || | |||| | || || || ||||| ||| | || |||||||| | ||||| Sbjct 1220 AACCGCAGTTCTGTGATTGCGGCCGAGACCAGCAATTCTGTTCTTCAGAATAGACTTCTG 1279 Query 160718 AATCATTCGTTCAGTCCAGTCAGTTCCCGTACCAAATGTAATTGTTACAAAAGGAGTCTG 160777 |||| ||| |||| |||||| ||| || | ||||| || |||||||| Sbjct 1280 GATCAGACGTGACTCCCAGGATGTTCCCAGACCGAAACCGAGAGTTACGAACGGAGTCTG 1339 Query 160778 TCCGTTTGAACTAAAGAGAGTATTTACTTCATATTCATAAGCTTGGAATGCATCGTATAC 160837 ||||| || || || || ||||||||||||||| || ||||| || || || Sbjct 1340 ACCGTTGGAGGTATGCAGGGTGTTTACTTCATATTCAAGAGACTGGAAGGCGTCATAGCA 1399 Query 160838 GTCTTTTTCTGTTTTAGATTGAGCATAATTCAACGCATCAGCGATTTGCCATTTTTCTG- 160896 || ||||| || | | | ||| | | || ||||| || ||||| | || | Sbjct 1400 CTCCTTTTCAGTACGGGCTCGGGCAAAGCTGTCCGGATCAGGAATGTGCCACTCCTCGGC 1459 Query 160897 CATCCTC-AATATGTTTTGCATAGGTGCGTTTAACATAAGGAGAAAGTACTTTATCTACA 160955 |||| || ||| | || | | | ||||||| || | ||| || | ||| ||| Sbjct 1460 CATCTTCTGATACTTCATGAAACTCTTGG--TAACATACGGGGCAAGCACCTCATC-ACA 1516 Query 160956 TTCG-CAAAAGTCGTTCCGCCGTATTGGTGAGAAGCAACCTGTGCAGTAATTTGTGCCAT 161014 | | || || |||||||| || |||||||| || | || ||||| | Sbjct 1517 GCGGTTGATGGTTGTACCGCCGTAGATATGGCTGGCAACCTGGGCGATGATCTGTGCGGT 1576 Query 161015 AATTGCAGTAGCAACGCCAATTGATTTAGGGGTTTCAATCTGCGCATTACCTAGCTTAAA 161074 || || || || | ||||| ||||| | ||| || | |||||||| | ||| || Sbjct 1577 AACCGCGGTTGCGGTACTGATTGACTTAGGTGATTCGATTTCGGCATTACCCATCTTGAA 1636 Query 161075 TCCGTTCTCAAGCATTCCTTTTAAATCTACTAAACAGCAATTAGTAAAT--GGAAGAGCA 161132 ||| || |||||||| | ||| | | | || | | | | || |||||| | Sbjct 1637 ACCGCGTTCCAGCATTCCGCCGACATCGA-TCAGCATACAGTTGAACATCGGGAAGAAC- 1694 Query 161133 GGGGAATAATCAATATCATGGAAATGAATAATTCCGCTTTCATGCGCTTTCATAA-TAAA 161191 || ||||| || | ||| || ||||| || || |||||||| ||| ||| || | Sbjct 1695 GGTGAATAGTCGAGATCGTGAAAATGGATCTCCCCTCTTTCATGGGCTCTCACAACTTCC 1754 Query 161192 AGACGGGACCAT---ATTTTTGGCAATGTGTTTAGACACAATACCAGCCATAAGGTCCCG 161248 || || | ||| | ||| ||| ||| | |||||||| || | |||||| || Sbjct 1755 TGA-GGAAGCATGTGCTGTTTTGCATAGTGGCGTGCAACAATACCTGCAAGAAGGTCACG 1813 Query 161249 TTGAGTTGGAAAAACACGAGAATCTTTATTAGCATTCTCGTT 161290 || || |||| ||| || || || ||||||||||| Sbjct 1814 CTGGGTCGGAATAACCTTGCTGTCCTTGTTGGCATTCTCGTT 1855 >seq2701 Length=6067 Score = 91.5 bits (100), Expect = 2e-13 Identities = 112/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 9591 AACGTCGCGCTGCTGTTCCGGAGTCAGAGAGTTAAAGCGAACTGCATAACCGGATACACG 9650 ||| || |||||||||| || | |||||| || || || |||||||| || ||||| Sbjct 5336 AACATCCTGCTGCTGTTCTTTGGTTAAAGAGTTGAAACGTACAGCATAACCTGAAACACG 5277 Query 9651 GATGGTCAGCTGCGGATATTTTTCCGGATGCTTAACTGCATCTTCCAGAGTTTCACGACG 9710 ||| ||||| ||||||||||| || || | | |||||| ||| ||||| | Sbjct 5276 GATTGTCAGTGTAGGATATTTTTCAGGGTGTTCCATTGCATCGAGCAGTGTTTCTCTGTT 5217 Query 9711 CAGAACGTTAACGTTCAGGTGTTGACCACCTTC 9743 |||||||| || ||||| || ||||| ||||| Sbjct 5216 GAGAACGTTCACATTCAGATGCTGACCGCCTTC 5184 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 545917202384400