Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alces_20americanus_20[genbank_20GCA_5F900089705.1_202017-06-20] 5,099 sequences; 74,234,735 total letters Query= NC_031010.1 Length=246390 Score E Sequences producing significant alignments: (Bits) Value seq2451 150 3e-31 seq4688 136 6e-27 seq758 131 3e-25 seq3773 127 3e-24 seq127 114 2e-20 seq3719 111 2e-19 seq3339 109 9e-19 seq3114 107 3e-18 seq1145 98.7 2e-15 seq2324 95.1 2e-14 seq4293 84.2 3e-11 >seq2451 Length=31860 Score = 150 bits (166), Expect = 3e-31 Identities = 161/209 (77%), Gaps = 4/209 (2%) Strand=Plus/Minus Query 202535 GTCATGAAAAGAAAGACCGTACCGGCACCGGCACGCGCTCCTTGTTCGGGGCCCAGATGC 202594 |||||||| | ||||||| ||||| |||||||| | | ||||||| |||||||| Sbjct 18861 GTCATGAA--GGAAGACCGCACCGGAACCGGCACCCAAAGCGTGTTCGGCTACCAGATGC 18804 Query 202595 GGTTTGACCTGACCGAAGGCTTCCCACTGGTGACCACGAAAAAGGTTCACCTCCGTTCTA 202654 | || ||||| ||||||| ||||| ||| | ||||| || ||||| ||||| || | Sbjct 18803 GCTTCAACCTGGCCGAAGGTTTCCCGCTGCTCACCACCAAGAAGGTGCACCTGAAATCCA 18744 Query 202655 TCATTCACGAGCTGCTGTGGTTCCTGAAAGGGGACACCAACAT-CAGTTACCTGAACGAT 202713 | || ||||||||||||||||||| || ||||||||||| || || |||||| || Sbjct 18743 TTATCTACGAGCTGCTGTGGTTCCTCTCTGGAGACACCAACATTCAATT-CCTGAAAGAC 18685 Query 202714 AACGGGGTCACTATCTGGGACGAATGGGC 202742 |||| || | ||||||||||||||||| Sbjct 18684 CACGGCGTGTCCATCTGGGACGAATGGGC 18656 >seq4688 Length=13253 Score = 136 bits (150), Expect = 6e-27 Identities = 150/200 (75%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 202543 AAGAAAGACCGTACCGGCACCGGCACGCGCTCCTTGTTCGGGGCCCAGATGCGGTTTGAC 202602 ||| | ||||| |||||| ||||| | | | ||||| ||||||||| || ||| Sbjct 3396 AAGCAGGACCGCACCGGCGTAGGCACCCAGAGCGTATTCGGCTACCAGATGCGATTCGAC 3455 Query 202603 CTGACCGAAGGCTTCCCACTGGTGACCACGAAAAAGGTTCACCTCCGTTCTATCATTCAC 202662 ||| ||||| ||||| || | ||||| |||||||| |||||||| || ||||| ||| Sbjct 3456 CTGCAGGAAGGTTTCCCCCTCCTCACCACCAAAAAGGTCCACCTCCGCTCCATCATCCAC 3515 Query 202663 GAGCTGCTGTGGTTCCTGAAAGGGGACACCAACATCAGTTACCTGAACGATAACGGGGTC 202722 ||||| || |||||| | || |||||||||||| ||||| ||| ||| |||| Sbjct 3516 GAGCTTCTCTGGTTCATAGCCGGCGACACCAACATCTCCTACCTCCACGCCAACAAGGTC 3575 Query 202723 ACTATCTGGGACGAATGGGC 202742 | ||||||||||||||||| Sbjct 3576 TCCATCTGGGACGAATGGGC 3595 >seq758 Length=33601 Score = 131 bits (144), Expect = 3e-25 Identities = 149/200 (75%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 202543 AAGAAAGACCGTACCGGCACCGGCACGCGCTCCTTGTTCGGGGCCCAGATGCGGTTTGAC 202602 ||| ||||||| || || |||||||||| | ||||||| |||||||| || || Sbjct 9099 AAGGAAGACCGCACAGGAACCGGCACGCAGAGCGTGTTCGGCTATCAGATGCGCTTCGAT 9040 Query 202603 CTGACCGAAGGCTTCCCACTGGTGACCACGAAAAAGGTTCACCTCCGTTCTATCATTCAC 202662 || || | |||||||| || | ||||| || ||||| |||||| || |||||| || Sbjct 9039 CTTGCCCAGGGCTTCCCTCTCCTTACCACCAAGAAGGTGCACCTCAAGTCCATCATTTAC 8980 Query 202663 GAGCTGCTGTGGTTCCTGAAAGGGGACACCAACATCAGTTACCTGAACGATAACGGGGTC 202722 ||||| ||||||||||| || ||||||||||||| || || || || |||| || Sbjct 8979 GAGCTCCTGTGGTTCCTTTCCGGAGACACCAACATCAAGTATCTTAAGGACCACGGCGTT 8920 Query 202723 ACTATCTGGGACGAATGGGC 202742 | || |||||||| ||||| Sbjct 8919 TCAATATGGGACGAGTGGGC 8900 >seq3773 Length=40482 Score = 127 bits (140), Expect = 3e-24 Identities = 148/200 (74%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 202543 AAGAAAGACCGTACCGGCACCGGCACGCGCTCCTTGTTCGGGGCCCAGATGCGGTTTGAC 202602 |||| |||||||| ||||| ||||| | |||| || ||||||||| || | Sbjct 38532 AAGACCGACCGTACGGGCACGGGCACAAAGAGCGTGTTTGGCCACCAGATGCGCTTCAGC 38591 Query 202603 CTGACCGAAGGCTTCCCACTGGTGACCACGAAAAAGGTTCACCTCCGTTCTATCATTCAC 202662 || ||||||||||| ||| |||| ||||||||| | ||||| || |||||||| Sbjct 38592 TTGCAGGAAGGCTTCCCCCTGCTGACGACGAAAAAGCTGCACCTGCGCAGCATCATTCAT 38651 Query 202663 GAGCTGCTGTGGTTCCTGAAAGGGGACACCAACATCAGTTACCTGAACGATAACGGGGTC 202722 ||| |||| ||||||||| || ||||| ||||| | |||||| | || ||| | || Sbjct 38652 GAGTTGCTCTGGTTCCTGCGGGGCGACACAAACATTAAGTACCTGCATGACAACCGCGTA 38711 Query 202723 ACTATCTGGGACGAATGGGC 202742 || ||||||||||| ||||| Sbjct 38712 ACCATCTGGGACGAGTGGGC 38731 >seq127 Length=36082 Score = 114 bits (126), Expect = 2e-20 Identities = 149/205 (73%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 202539 TGAA-AAGAAAGACCGTACCGGCACCGGCACGCGCTCCTTGTTCGGGGCCCAGATGCGGT 202597 |||| ||| ||||||| || || || ||||||| || ||||||| |||||||| | Sbjct 1461 TGAAGAAGGAAGACCGCACGGGAACGGGCACGCTGTCGGTGTTCGGCCATCAGATGCGTT 1402 Query 202598 TTGACCTGACCGAAGGCTTCCCACTGGTGACCACGAAAAAGGTTCACCTCCGTTCTATCA 202657 | |||| | || |||||||| ||| | ||||| || || | ||||| || |||| Sbjct 1401 TCCGCCTGTCGGACGGCTTCCCCCTGCTAACCACCAAGAAACTGCACCTGAAGTCCATCA 1342 Query 202658 TTCACGAGCTGCTGTGGTTCCTGAAAGGGGACACCAACATCAGTTACCTGAACGATAACG 202717 | ||||||| || ||||||||| | || ||||||||||| | || ||| | || ||| Sbjct 1341 TCTACGAGCTCCTCTGGTTCCTGCAGGGCGACACCAACATACGCTATCTGCAGGAGCACG 1282 Query 202718 GGGTCACTATCTGGGACGAATGGGC 202742 | || |||||| |||| ||||| Sbjct 1281 GCGTACGCATCTGGAACGAGTGGGC 1257 >seq3719 Length=49728 Score = 111 bits (122), Expect = 2e-19 Identities = 141/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 202549 GACCGTACCGGCACCGGCACGCGCTCCTTGTTCGGGGCCCAGATGCGGTTTGACCTGACC 202608 ||||| |||||||||||||| | | | |||||| |||||||| || |||| | Sbjct 24236 GACCGCACCGGCACCGGCACCATCAGCATTTTCGGGCATCAGATGCGATTCAACCTCTCG 24177 Query 202609 GAAGGCTTCCCACTGGTGACCACGAAAAAGGTTCACCTCCGTTCTATCATTCACGAGCTG 202668 || |||||||| || || ||||| ||||| || || || || || || | |||||| Sbjct 24176 GAGGGCTTCCCGCTCGTCACCACAAAAAAAGTGCATCTGAAGTCGATAATCTATGAGCTG 24117 Query 202669 CTGTGGTTCCTGAAAGGGGACACCAACATCAGTTACCTGAACGATAACGGGGTCACTATC 202728 |||||| || | | || ||||||||||| | |||||| |||| || ||| | || Sbjct 24116 CTGTGGCTCATCAGCGGCGACACCAACATAAAATACCTGCACGACCACAAGGTTTCGATT 24057 Query 202729 TGGGACGAATGGGC 202742 ||||| |||||||| Sbjct 24056 TGGGATGAATGGGC 24043 >seq3339 Length=9595 Score = 109 bits (120), Expect = 9e-19 Identities = 144/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 202543 AAGAAAGACCGTACCGGCACCGGCACGCGCTCCTTGTTCGGGGCCCAGATGCGGTTTGAC 202602 ||| |||||||||| ||||| ||||| | | | || || |||| || | || Sbjct 2054 AAGGAAGACCGTACAGGCACTGGCACCATCAGCATCTTTGGCCACCAGGAACGCTACAAC 2113 Query 202603 CTGACCGAAGGCTTCCCACTGGTGACCACGAAAAAGGTTCACCTCCGTTCTATCATTCAC 202662 ||| || || ||||| ||| ||||||| || || | || || || ||||| || Sbjct 2114 CTGCAAGATGGATTCCCGCTGCTGACCACCAAGAAACTCCATCTGAAGTCCATCATATAC 2173 Query 202663 GAGCTGCTGTGGTTCCTGAAAGGGGACACCAACATCAGTTACCTGAACGATAACGGGGTC 202722 || ||| |||||||||||||||| ||||||||| | ||||||| | || | |||||| Sbjct 2174 GAACTGTTGTGGTTCCTGAAAGGCGACACCAACGTGCATTACCTGCAGGAACATGGGGTC 2233 Query 202723 ACTATCTGGGACGAATGGGC 202742 | |||||| |||||||||| Sbjct 2234 AGAATCTGGAACGAATGGGC 2253 >seq3114 Length=59224 Score = 107 bits (118), Expect = 3e-18 Identities = 122/164 (74%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 202579 TTCGGGGCCCAGATGCGGTTTGACCTGACCGAAGGCTTCCCACTGGTGACCACGAAAAAG 202638 ||||| ||||||||||||| |||| || || ||||| ||| | || ||||| || Sbjct 8058 TTCGGCCACCAGATGCGGTTTAACCTCGAGGAGGGATTCCCCCTGCTCACAACGAAGAAA 8117 Query 202639 GTTCACCTCCGTTCTATCATTCACGAGCTGCTGTGGTTCCTGAAAGGGGACACCAACATC 202698 | ||||| || || || | || ||||||||||||||| || ||||| |||||| Sbjct 8118 CTACACCTGAAGTCGATTATCTATGAACTGCTGTGGTTCCTGCGGGGCGACACAAACATC 8177 Query 202699 AGTTACCTGAACGATAACGGGGTCACTATCTGGGACGAATGGGC 202742 | |||||||| || |||| || | ||||||||||||||||| Sbjct 8178 CGCTACCTGAAGGAGCACGGCGTGAGCATCTGGGACGAATGGGC 8221 >seq1145 Length=6550 Score = 98.7 bits (108), Expect = 2e-15 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 202540 GAAAAGAAAGACCGTACCGGCACCGGCACGCGCTCCTTGTTCGGGGCCCAGATGCGGTTT 202599 || |||| ||||| ||||| || |||||| || |||| || |||||||||||| Sbjct 2656 GAGAAGAGCGACCGGACCGGAACGGGCACGATATCAGTGTTTGGCAACCAGATGCGGTTC 2715 Query 202600 GACCTGACCGAAGGCTTCCCACTGGTGACCACGAAAAAGGTTCACCTCCGTTCTATCATT 202659 | ||| || || ||||| ||| | |||||||| ||| | || || || ||||| Sbjct 2716 AATCTGGAGGACGGATTCCCGCTGCTCACCACGAAGAAGCTCCATCTGAAATCCATCATA 2775 Query 202660 CACGAGCTGCTGTGGTTCCTGAAAGGGGACACCAACATCAGTTACCTGAACGATAACGGG 202719 | || ||| ||||||||||||| || || |||||| | | ||||| | || | || Sbjct 2776 TATGAACTGTTGTGGTTCCTGAAGGGCGATACCAACGTGAAATACCTCCAGGAGCATGGT 2835 Query 202720 GTCACTATCTGGGACGAATGGGCG 202743 || |||||| | ||||||||| Sbjct 2836 GTGCGCATCTGGAATGAATGGGCG 2859 >seq2324 Length=83463 Score = 95.1 bits (104), Expect = 2e-14 Identities = 143/201 (71%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 202543 AAGAAAGACCGTACCGGCACCGGCACGCGCTCCTTGTTCGGGGCCCAGATGCGGTTTGAC 202602 |||| ||||| ||||| ||||||| | | ||||| |||| || | ||| Sbjct 68756 AAGACCGACCGCACCGGGGTGGGCACGCAGAGCATCTTCGGCCACCAGTGCCGCTACGAC 68697 Query 202603 CTGACCGAAGGCTTCCCACTGGTGACCACGAAAAAGGTTCACCTCCGTTCTATCATTCAC 202662 ||| ||||| ||||| ||||||||||| || ||||| ||| ||||| ||| Sbjct 68696 CTGCAGGAAGGTTTCCCCCTGGTGACCACCAAGAAGGTGTTCCTGAAGGGCATCATCCAC 68637 Query 202663 GAGCTGCTGTGGTTCCTGAAAGGGGACACCAACATCAGTTACCTGAACGATAACGGGGT- 202721 ||| ||||||||||| | || || ||||||||||| || ||| ||| ||| || Sbjct 68636 GAGTTGCTGTGGTTCATATCCGGCGATACCAACATCAGGTATCTGCTCGACAACAACGTG 68577 Query 202722 CACTATCTGGGACGAATGGGC 202742 ||| ||||||||||||||||| Sbjct 68576 CAC-ATCTGGGACGAATGGGC 68557 >seq4293 Length=67978 Score = 84.2 bits (92), Expect = 3e-11 Identities = 108/146 (74%), Gaps = 6/146 (4%) Strand=Plus/Minus Query 202600 GACCTGACCGAAGGCTTCCCACTGGTGACCACGAAAAAGGTTCACCTCCGTTCTATCATT 202659 |||||| ||||||||||| ||| ||||||| ||||| || |||| || || Sbjct 67739 GACCTGCAGGAAGGCTTCCCCCTGCTGACCACCAAAAAAGTGTTCCTCAAGGGCATAATA 67680 Query 202660 CACGAGCTGCTGTGGTTCCTGAAAGGGGACACCAACATCAGTTACCT---GAACGATAAC 202716 |||||||| || |||||| | |||||||||||||| | ||||| | || | ||| Sbjct 67679 CACGAGCTTCTCTGGTTCATATCCGGGGACACCAACATAAAATACCTCCTGGACAACAAC 67620 Query 202717 GGGGTCACTATCTGGGACGAATGGGC 202742 | | ||| ||||||||||||||||| Sbjct 67619 GTG--CAC-ATCTGGGACGAATGGGC 67597 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 788269754454000