Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alces_20americanus_20[genbank_20GCA_5F900089705.1_202017-06-20] 5,099 sequences; 74,234,735 total letters Query= NC_031011.1 Length=168993 Score E Sequences producing significant alignments: (Bits) Value seq2964 123 3e-23 seq2701 96.9 4e-15 >seq2964 Length=2227 Score = 123 bits (136), Expect = 3e-23 Identities = 619/962 (64%), Gaps = 42/962 (4%) Strand=Plus/Plus Query 108290 GCGATGCGAGGAAGATTCAGTGTTACAACACCAAGATTATTACGTCCATCAAGAATTTCA 108349 ||||| ||||| |||||||| |||| ||||| ||||| ||||| || || | || | | Sbjct 951 GCGATACGAGGCAGATTCAGACTTACCACACCCAGATTGTTACGGCCGTCGTGGATCTGA 1010 Query 108350 TTACCAGTCGAATCTTTCCATACGCT-CAAGAAACTA-CGGCAACCCATTGGAGAAACAG 108407 ||| || || | |||||| | || || | ||||| ||||| |||| | Sbjct 1011 ACACCGTTC---TCCT--CATACGGGGCGAGGAATGAGCGGCAGCCCATCGGAGT--CTT 1063 Query 108408 GAATAGATGAACCAGTGATAGCTTTAT----TGTTCTTAGCTGAAATAATATCAGGATAC 108463 |||| ||||| || | ||| | || || ||| | | | ||||| |||||| Sbjct 1064 GAAT----GAACCGGTAAC--CTTCACAACCTGATCGTAGTTCAGA--ATATCCGGATAC 1115 Query 108464 ATTCTTTTGCTTGCACACTCTAGAGCAAGCTGCTTAATATCATAGTTCGGATC-GTCTTT 108522 ||||| ||| || || || ||||| |||| ||| ||||| ||||| ||||| || | Sbjct 1116 ATTCTCTTGGAGGCGCATTCAAGAGCCAGCTTCTTGATATCGTAGTTAGGATCACCCTCT 1175 Query 108523 ATAAAGATTAACACCTTCTTCA--ACAAACATAACAAGCTTAGGGAAAATAGGAGTTATC 108580 || | | | ||| ||| | ||||| || ||||||||||||| | |||| | Sbjct 1176 TTACGGTTCAGTCCCTCCTTGATGGCAAAC---ACCAGCTTAGGGAAAACCGCAGTTCTG 1232 Query 108581 CCATCACGACCAAGACCTTTAATACGATTTTTCAGAATTGCTTTCTGAATCATTCGTTCA 108640 || || || ||||| ||| | || |||||||| | ||||| |||| ||| Sbjct 1233 TGATTGCGGCCGAGACCAGCAATTCTGTTCTTCAGAATAGACTTCTGGATCAGACGTGAC 1292 Query 108641 GTCCAGTCAGTTCCTGTACCAAATGTAATTGTTACAAAAGGAGTCTGTCCGTTTGAACTA 108700 |||| ||||| ||| || | ||||| || |||||||| ||||| || || Sbjct 1293 TCCCAGGATGTTCCCAGACCGAAACCGAGAGTTACGAACGGAGTCTGACCGTTGGAGGTA 1352 Query 108701 AAGAGAGTATTTACTTCATATTCATAAGCTTGGAATGCATCGTATACGTCTTTTTCTGTT 108760 || || ||||||||||||||| || ||||| || || || || ||||| || Sbjct 1353 TGCAGGGTGTTTACTTCATATTCAAGAGACTGGAAGGCGTCATAGCACTCCTTTTCAGTA 1412 Query 108761 TTAGATTGAGCATAATTTAACGCATCAGCGATTTGCCATTTTTCTG-CATCCTC-AATAT 108818 | | | ||| | | || ||||| || ||||| | || | |||| || ||| Sbjct 1413 CGGGCTCGGGCAAAGCTGTCCGGATCAGGAATGTGCCACTCCTCGGCCATCTTCTGATAC 1472 Query 108819 GTTTTGCATAGGTGCGTTTAACATAAGGAGAAAGTACTTTATCTACATTAG-CAAAAGTC 108877 | || | | | ||||||| || | ||| || | ||| ||| | | || Sbjct 1473 TTCATGAAACTCTTGG--TAACATACGGGGCAAGCACCTCATC-ACAGCGGTTGATGGTT 1529 Query 108878 GTTCCGCCGTATTGGTGAGAAGCAACCTGTGCAGTAATTTGTGCCATAATTGCAGTAGCA 108937 || |||||||| || |||||||| || | || ||||| ||| || || || Sbjct 1530 GTACCGCCGTAGATATGGCTGGCAACCTGGGCGATGATCTGTGCGGTAACCGCGGTTGCG 1589 Query 108938 ACGCCAATTGATTTAGGAGTTTCAATCTGCGCATTACCTAGCTTAAATCCGTTCTCAAGC 108997 | ||||| ||||| | ||| || | |||||||| | ||| || ||| || ||| Sbjct 1590 GTACTGATTGACTTAGGTGATTCGATTTCGGCATTACCCATCTTGAAACCGCGTTCCAGC 1649 Query 108998 ATTCCTTTTAAATCTACTAAACAGCAATTAGTAAAT--GGAAGAGCAGGGGAATAATCAA 109055 ||||| | ||| | | | || | | | | || |||||| | || ||||| || | Sbjct 1650 ATTCCGCCGACATCGA-TCAGCATACAGTTGAACATCGGGAAGAAC-GGTGAATAGTCGA 1707 Query 109056 TATCGTGGAAATGAATAATTCCGCTTTCATGCGCTTTCATAA-TAAAAGACGGGACCAT- 109113 |||||| ||||| || || |||||||| ||| ||| || | || || | ||| Sbjct 1708 GATCGTGAAAATGGATCTCCCCTCTTTCATGGGCTCTCACAACTTCCTGA-GGAAGCATG 1766 Query 109114 --ATTTTTGGCAATGTGTTTAGACACAATACCAGCCATAAGGTCCCGTTGAGTTGGAAAA 109171 | ||| ||| ||| | |||||||| || | |||||| || || || |||| | Sbjct 1767 TGCTGTTTTGCATAGTGGCGTGCAACAATACCTGCAAGAAGGTCACGCTGGGTCGGAATA 1826 Query 109172 ACACGAGAATCTTTATTAGCATTCTCGTTTAAAAGGTCTTTATTAGTTTTATGAATCAAT 109231 || || || || ||||||||||| | || ||| ||| | | || |||| | Sbjct 1827 ACCTTGCTGTCCTTGTTGGCATTCTCGTTAAGCAGATCTGCATTTGACTGATCGATCAGT 1886 Query 109232 CC 109233 || Sbjct 1887 CC 1888 >seq2701 Length=6067 Score = 96.9 bits (106), Expect = 4e-15 Identities = 113/153 (74%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 126808 AACATCGCGCTGCTGTTCCGGAGTCAGAGAGTTAAAGCGAACTGCATAACCGGATACACG 126867 |||||| |||||||||| || | |||||| || || || |||||||| || ||||| Sbjct 5336 AACATCCTGCTGCTGTTCTTTGGTTAAAGAGTTGAAACGTACAGCATAACCTGAAACACG 5277 Query 126868 GATGGTCAGCTGCGGATATTTTTCCGGATGCTTAACTGCATCTTCCAGAGTTTCACGACG 126927 ||| ||||| ||||||||||| || || | | |||||| ||| ||||| | Sbjct 5276 GATTGTCAGTGTAGGATATTTTTCAGGGTGTTCCATTGCATCGAGCAGTGTTTCTCTGTT 5217 Query 126928 CAGAACGTTAACGTTCAGGTGTTGACCACCTTC 126960 |||||||| || ||||| || ||||| ||||| Sbjct 5216 GAGAACGTTCACATTCAGATGCTGACCGCCTTC 5184 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 540615140346120