Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alces_20americanus_20[genbank_20GCA_5F900089705.1_202017-06-20] 5,099 sequences; 74,234,735 total letters Query= NC_031020.1 Length=163201 Score E Sequences producing significant alignments: (Bits) Value seq2701 123 3e-23 seq2941 105 7e-18 seq3952 84.2 2e-11 seq2216 84.2 2e-11 seq1731 84.2 2e-11 seq2964 82.4 8e-11 >seq2701 Length=6067 Score = 123 bits (136), Expect = 3e-23 Identities = 123/157 (78%), Gaps = 2/157 (1%) Strand=Plus/Minus Query 52738 ACATCACGCTGTTGTTCTTTGGTCAGGGAGTTAAAGCGAACAGCATAACCAGAAACACGG 52797 ||||| |||| ||||||||||| | ||||| || || ||||||||||| ||||||||| Sbjct 5335 ACATCCTGCTGCTGTTCTTTGGTTAAAGAGTTGAAACGTACAGCATAACCTGAAACACGG 5276 Query 52798 ATAGTCAACTGTGGG-TATTTTGTAGGGTCTTCCATCGCTTCAAGCAACATTTCACGATT 52856 || |||| ||| || |||||| ||||| |||||| || || |||| |||| | || Sbjct 5275 ATTGTCAG-TGTAGGATATTTTTCAGGGTGTTCCATTGCATCGAGCAGTGTTTCTCTGTT 5217 Query 52857 CATTACGTTAACGTTCAGGTGCTGACCGCCTTCGACA 52893 | ||||| || ||||| |||||||||||||| ||| Sbjct 5216 GAGAACGTTCACATTCAGATGCTGACCGCCTTCTACA 5180 >seq2941 Length=2426 Score = 105 bits (116), Expect = 7e-18 Identities = 67/73 (92%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 66402 ATGGCACACCCTACAGGATTCGAACCTGTGACCTACGGCTTAGAAGGCCGTTGCTCTATC 66461 ||||| ||||| ||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 2269 ATGGCGTGCCCTATAGGATTCGAACCTATGACCTACGGCTTAGAAGGCCGTTGCTCTATC 2328 Query 66462 CAGCTGAGCTAAG 66474 ||||||||| ||| Sbjct 2329 CAGCTGAGCCAAG 2341 >seq3952 Length=6226 Score = 84.2 bits (92), Expect = 2e-11 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 66417 GGATTCGAACCTGTGACCTACGGCTTAGAAGGCCGTTGCTCTATCCAGCTGAGCTA 66472 ||||||||||| |||| ||||||||||||||||||||||||||||||||||||| Sbjct 693 GGATTCGAACCCCCGACCCACGGCTTAGAAGGCCGTTGCTCTATCCAGCTGAGCTA 748 >seq2216 Length=5131 Score = 84.2 bits (92), Expect = 2e-11 Identities = 78/98 (80%), Gaps = 2/98 (2%) Strand=Plus/Minus Query 66417 GGATTCGAACCTGTGACCTACGGCTTAGAAGGCCGTTGCTCTATCCAGCTGAGCTAAGAG 66476 ||| |||||||| | ||||| ||||||||||| ||||||||||||| ||||||||| || Sbjct 4500 GGACTCGAACCTCCGGCCTACTGCTTAGAAGGCAGTTGCTCTATCCAACTGAGCTAACAG 4441 Query 66477 TGCATTAATTTGGTGTCCAAGGTGGGATTTGAACCCAC 66514 |||| |||||| | | ||||| | |||||||| Sbjct 4440 CGCAT--ATTTGGAGCGGGTGATGGGAATCGAACCCAC 4405 >seq1731 Length=76336 Score = 84.2 bits (92), Expect = 2e-11 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Minus Query 66417 GGATTCGAACCTGTGACCTACGGCTTAGAAGGCCGTTGCTCTATCCAGCTGAGCTA 66472 ||||||||||| |||| ||||||||||||||||||||||||||||||||||||| Sbjct 59262 GGATTCGAACCCCCGACCCACGGCTTAGAAGGCCGTTGCTCTATCCAGCTGAGCTA 59207 >seq2964 Length=2227 Score = 82.4 bits (90), Expect = 8e-11 Identities = 204/307 (66%), Gaps = 7/307 (2%) Strand=Plus/Plus Query 37677 ATGTCCGGGTACATTCGTTTGGATGAACATTCAAGAGCCAATCGTTTAATTGCATAACCA 37736 || ||||| ||||||| ||||| | ||||||||||||| || || | || | Sbjct 1104 ATATCCGGATACATTCTCTTGGAGGCGCATTCAAGAGCCAGCTTCTTGATATCGTAGTTA 1163 Query 37737 GGATCTCCCGGATTAAGGTTAATACCTTCTTCGAT---AAACATAACCAGTTTAGGGAAG 37793 ||||| ||| ||| |||| | || || | ||| |||| ||||| |||||||| Sbjct 1164 GGATCACCCTCTTTACGGTTCAGTCCCTCCTTGATGGCAAAC---ACCAGCTTAGGGAAA 1220 Query 37794 ATTGCAGTGATTTTATTTTTACCAAGACCTTTAATTCTGTTTTCGAGAATTGATTTCTGA 37853 | ||||| | | ||| || ||||| ||||||||| | ||||| || ||||| Sbjct 1221 ACCGCAGTTCTGTGATTGCGGCCGAGACCAGCAATTCTGTTCTTCAGAATAGACTTCTGG 1280 Query 37854 ATTAACTGAGATTCCCAGGATGTACCAGTACCAAATGAAACAGTGACAAAAGGTGTTTGT 37913 || | | || ||||||||||| || ||| || | ||| || || || || || Sbjct 1281 ATCAGACGTGACTCCCAGGATGTTCCCAGACCGAAACCGAGAGTTACGAACGGAGTCTGA 1340 Query 37914 CCATTCGAGCTGAATAATGTGTTAATTTCGTATTCATATGCCTGGAATGAATCGTA-TAC 37972 || || ||| | | ||||| | ||| |||||| | |||||| | || || || Sbjct 1341 CCGTTGGAGGTATGCAGGGTGTTTACTTCATATTCAAGAGACTGGAAGGCGTCATAGCAC 1400 Query 37973 TTCTTTT 37979 | ||||| Sbjct 1401 TCCTTTT 1407 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 522081921682440