Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alces_20americanus_20[genbank_20GCA_5F900089705.1_202017-06-20] 5,099 sequences; 74,234,735 total letters Query= NC_031030.1 Length=170788 Score E Sequences producing significant alignments: (Bits) Value seq2964 127 2e-24 >seq2964 Length=2227 Score = 127 bits (140), Expect = 2e-24 Identities = 619/962 (64%), Gaps = 42/962 (4%) Strand=Plus/Plus Query 41335 GCGATACGAGGAAGATTCAGTGTTACAACACCAAGATTATTACGTCCATCAAGAATTTCA 41394 ||||||||||| |||||||| |||| ||||| ||||| ||||| || || | || | | Sbjct 951 GCGATACGAGGCAGATTCAGACTTACCACACCCAGATTGTTACGGCCGTCGTGGATCTGA 1010 Query 41395 TTACCAGTCGAATCTTTCCATACGCT-CAAGAAACTA-CGGCAACCCATTGGAGAAACCG 41452 ||| || || | |||||| | || || | ||||| ||||| |||| | Sbjct 1011 ACACCGTTC---TCCT--CATACGGGGCGAGGAATGAGCGGCAGCCCATCGGAGT--CTT 1063 Query 41453 GAACTGAAGAACCAGTAATAGCTTTATTATTCTTAACCGAAAT----AATGTCAGGATAC 41508 ||| ||||| |||| ||| | | | | | || | | ||| || |||||| Sbjct 1064 GAAT----GAACCGGTAAC--CTTCACAA--CCTGATCGTAGTTCAGAATATCCGGATAC 1115 Query 41509 ATTCTTTTGCTTGCGCACTCTAGAGCAAGCTGTTTAATATCATAGTTCGGATCGTTTTTA 41568 ||||| ||| ||||| || ||||| |||| || ||||| ||||| ||||| | Sbjct 1116 ATTCTCTTGGAGGCGCATTCAAGAGCCAGCTTCTTGATATCGTAGTTAGGATCACCCTCT 1175 Query 41569 TAAAGATTAACACCTTCTTCAA---CAAACATAACAAGCTTAGGAAAAATAGGAGTTATC 41625 | | | || | || || | | |||||| | |||||||| |||| | |||| | Sbjct 1176 TTACGGTTCAGTCCCTCCTTGATGGCAAACA---CCAGCTTAGGGAAAACCGCAGTTCTG 1232 Query 41626 CCATCACGACCAAGACCTTTAATACGATTTTTCAGAATTGCTTTCTGAATCATTCGTTCA 41685 || || || ||||| ||| | || |||||||| | ||||| |||| ||| Sbjct 1233 TGATTGCGGCCGAGACCAGCAATTCTGTTCTTCAGAATAGACTTCTGGATCAGACGTGAC 1292 Query 41686 GTCCAGTCAGTTCCCGTACCAAATGTAATTGTTACAAAAGGCGTTTGCCCGTTTGAACTA 41745 |||| |||||| ||| || | ||||| || || || || ||||| || || Sbjct 1293 TCCCAGGATGTTCCCAGACCGAAACCGAGAGTTACGAACGGAGTCTGACCGTTGGAGGTA 1352 Query 41746 AAAAGAGTATTTACTTCATATTCATAAGCTTGGAATGCATCGTATACATCTTTTTCTGTT 41805 || || ||||||||||||||| || ||||| || || || || ||||| || Sbjct 1353 TGCAGGGTGTTTACTTCATATTCAAGAGACTGGAAGGCGTCATAGCACTCCTTTTCAGTA 1412 Query 41806 TTAGATTGAGCATAATTCAACGCATCAGCGATTTGCCATTTTTCTG-CATCCTC-AATAT 41863 | | | ||| | | || ||||| || ||||| | || | |||| || ||| Sbjct 1413 CGGGCTCGGGCAAAGCTGTCCGGATCAGGAATGTGCCACTCCTCGGCCATCTTCTGATAC 1472 Query 41864 GTTTTGCATAGGTGCGTTTAACATAAGGAGAAAGTACTTTATCTACATTAG-CAAAAGTC 41922 | || | | | ||||||| || | ||| || | ||| ||| | | || Sbjct 1473 TTCATGAAACTCTTGG--TAACATACGGGGCAAGCACCTCATC-ACAGCGGTTGATGGTT 1529 Query 41923 GTTCCGCCGTATTGATGGGAAGCAACCTGTGCAGTAATTTGTGCCATAATTGCGGTAGCA 41982 || |||||||| |||| |||||||| || | || ||||| ||| ||||| || Sbjct 1530 GTACCGCCGTAGATATGGCTGGCAACCTGGGCGATGATCTGTGCGGTAACCGCGGTTGCG 1589 Query 41983 ACTCCAATTGATTTAGGAGTTTCAATCTGTGCATTACCTAGCTTAAATCCGTTTTCAAGC 42042 | ||||| ||||| | ||| || | |||||||| | ||| || ||| ||| ||| Sbjct 1590 GTACTGATTGACTTAGGTGATTCGATTTCGGCATTACCCATCTTGAAACCGCGTTCCAGC 1649 Query 42043 ATTCCTTTTAAATCTACTAAACAGCAATTAGTAAAT--GGAAGAGCAGGGGAATAATCAA 42100 ||||| | ||| | | | || | | | | || |||||| | || ||||| || | Sbjct 1650 ATTCCGCCGACATCGA-TCAGCATACAGTTGAACATCGGGAAGAAC-GGTGAATAGTCGA 1707 Query 42101 TATCGTGGAAATGGATAATTCCGCTTTCATGCGCTTTCATAA-TAAAAGACGGGACCAT- 42158 |||||| |||||||| || |||||||| ||| ||| || | || || | ||| Sbjct 1708 GATCGTGAAAATGGATCTCCCCTCTTTCATGGGCTCTCACAACTTCCTGA-GGAAGCATG 1766 Query 42159 --ATTTTTGGCAATGTGTTTAGACACAATACCAGCCATAAGGTCCCGTTGAGTTGGAAAA 42216 | ||| ||| ||| | |||||||| || | |||||| || || || |||| | Sbjct 1767 TGCTGTTTTGCATAGTGGCGTGCAACAATACCTGCAAGAAGGTCACGCTGGGTCGGAATA 1826 Query 42217 ACACGAGAATCTTTATTAGCATTCTCGTTTAAAAGGTCTTTATTAGTTTTATGAATCAAT 42276 || || || || ||||||||||| | || ||| ||| | | || |||| | Sbjct 1827 ACCTTGCTGTCCTTGTTGGCATTCTCGTTAAGCAGATCTGCATTTGACTGATCGATCAGT 1886 Query 42277 CC 42278 || Sbjct 1887 CC 1888 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 546358774237920