Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alces_20americanus_20[genbank_20GCA_5F900089705.1_202017-06-20]
5,099 sequences; 74,234,735 total letters
Query= NC_031043.1
Length=229501
Score E
Sequences producing significant alignments: (Bits) Value
seq2619 196 7e-45
seq15 147 3e-30
seq140 104 3e-17
seq4988 91.5 2e-13
seq3076 89.7 8e-13
seq758 86.0 9e-12
seq4380 84.2 3e-11
>seq2619
Length=11042
Score = 196 bits (216), Expect = 7e-45
Identities = 225/303 (74%), Gaps = 0/303 (0%)
Strand=Plus/Minus
Query 99468 ATGAAACAATATTTGGAATTAATGAGTAAGGTTTTAAATGAAGGCGTTGTTAAAGGCGAC 99527
||||| || ||||| |||||||||| || |||| ||||||| | ||| | ||
Sbjct 2942 ATGAAGCAGTATTTAGAATTAATGAAAAAAATTTTGGATGAAGGTGCGCAGAAAAGTGAT 2883
Query 99528 CGTACTGGCACTGGTACGTTGTCTCTGTTTGGGCATCAAATGCGTTTTAATTTGGCTGAA 99587
|||||||| || |||||| ||||| | ||||| ||||| ||| | |||||| | ||||||
Sbjct 2882 CGTACTGGTACGGGTACGCTGTCTTTATTTGGACATCAGATGAGATTTAATCTTGCTGAA 2823
Query 99588 GGTTTTCCTCTGGTCACTACTAAGCGCTGTCACCTCCGTTCTATTATTCATGAACTCCTT 99647
||||||||||| || || || ||| ||||| || || || ||| ||||||| |||
Sbjct 2822 GGTTTTCCTCTAGTGACAACCAAGAAGTGTCATCTTAAATCAATAATTTATGAACTGCTT 2763
Query 99648 TGGTTCCTGAAAGGGGATACCAATACCCAGTACCTGAAAGATAACGGCGTCACTATCTGG 99707
||||| || || || |||||||| | | || | |||||| |||| |||| |||||||
Sbjct 2762 TGGTTTCTTAACGGTGATACCAACATAAAATATTTAAAAGATCACGGAGTCAGTATCTGG 2703
Query 99708 AATGAGTGGGAAAACGAGAACGGTGACTTAGGACCGGTATACGGAAAGCAGTGGCGGTCT 99767
||||||||| | || || ||||| | || ||| ||||||| | |||||| | ||
Sbjct 2702 GATGAGTGGGCTGATGAAAATGGTGAACTGGGGCCGATATACGGTCACCAGTGGAGATCC 2643
Query 99768 TGG 99770
|||
Sbjct 2642 TGG 2640
>seq15
Length=61086
Score = 147 bits (162), Expect = 3e-30
Identities = 198/273 (73%), Gaps = 2/273 (1%)
Strand=Plus/Minus
Query 99504 AATGAAGGCGTTGTTAAAGGCGACCGTACTGGCACTGGTACGTTGTCTCTGTTTGGGCAT 99563
||||||||| | | || |||||||| ||||||||||||||| | ||||||| |||
Sbjct 34144 AATGAAGGCATAGAGAAGGGCGACCGCACTGGCACTGGTACGAAAAGTGTGTTTGGTCAT 34085
Query 99564 CAAATGCGTTTTAATTTGGCTGAAGGTTTTCCTCTGGTCACTAC-TAAGCGCTGTCACCT 99622
|| ||||| ||| | ||||||| |||||||| ||| | ||||| || ||| || ||
Sbjct 34084 CAGATGCGCTTTCGTATGGCTGATGGTTTTCCACTGCTTACTACGAAAAAACTG-CATCT 34026
Query 99623 CCGTTCTATTATTCATGAACTCCTTTGGTTCCTGAAAGGGGATACCAATACCCAGTACCT 99682
|| || || |||||||| || ||||| || | || |||||||||| || || ||
Sbjct 34025 GAAGTCAATAATACATGAACTGCTGTGGTTTCTAAGTGGTGATACCAATATCCGCTATCT 33966
Query 99683 GAAAGATAACGGCGTCACTATCTGGAATGAGTGGGAAAACGAGAACGGTGACTTAGGACC 99742
|||| || || || ||| ||||| || |||| | || ||||| || | || ||
Sbjct 33965 TCAAGAGAATGGTGTGCGTATATGGAACGAATGGGCTGATGAAAACGGAGAACTCGGCCC 33906
Query 99743 GGTATACGGAAAGCAGTGGCGGTCTTGGCCCGA 99775
||||| || | |||||||| |||||||| ||
Sbjct 33905 TGTATATGGTCATCAGTGGCGTTCTTGGCCTGA 33873
>seq140
Length=204551
Score = 104 bits (114), Expect = 3e-17
Identities = 203/298 (68%), Gaps = 4/298 (1%)
Strand=Plus/Minus
Query 99468 ATGAAACAATATTTGGAATTAATGAGTAAGGTTTTAAATGAA--GGCGTTGTTAAAGGCG 99525
||| ||||||||||||| ||| ||| ||| | ||| || ||||||| |||| |
Sbjct 131069 ATGCAACAATATTTGGATTTATTGA--AAGATATTATGGAAAACGGCGTTGATAAAATGG 131012
Query 99526 ACCGTACTGGCACTGGTACGTTGTCTCTGTTTGGGCATCAAATGCGTTTTAATTTGGCTG 99585
| ||||| || ||| ||| || | || || | || ||||| ||| ||||
Sbjct 131011 ATCGTACGGGAGTTGGCACGCGCTCGGTTTTCGGTCGGCAGATGCGCTTTGATTTAAGCA 130952
Query 99586 AAGGTTTTCCTCTGGTCACTACTAAGCGCTGTCACCTCCGTTCTATTATTCATGAACTCC 99645
|||||||||| || || || ||||| || || |||||| |||||||
Sbjct 130951 AAGGTTTTCCGCTTGTAACGACTAAAAAAGTGCATCTTAAAAGCATTATTTATGAACTTT 130892
Query 99646 TTTGGTTCCTGAAAGGGGATACCAATACCCAGTACCTGAAAGATAACGGCGTCACTATCT 99705
| ||||| ||||||| ||||| ||| | || ||| | || |||| |||| || |
Sbjct 130891 TGTGGTTTTTGAAAGGCGATACAAATGTTAAATATCTGCAGGAACACGGTGTCAGAATTT 130832
Query 99706 GGAATGAGTGGGAAAACGAGAACGGTGACTTAGGACCGGTATACGGAAAGCAGTGGCG 99763
|||||||||||| | | || ||||| || | ||||| || ||||| |||||||||
Sbjct 130831 GGAATGAGTGGGCAGATGAAAACGGCGAACTCGGACCTGTTTACGGTTCGCAGTGGCG 130774
>seq4988
Length=203393
Score = 91.5 bits (100), Expect = 2e-13
Identities = 209/307 (68%), Gaps = 6/307 (2%)
Strand=Plus/Minus
Query 99468 ATGAAACAATATTTGGAATTAAT-GAGTAAGGTTTTAAATGAAGGCGTTGTTAAAGGC-G 99525
|||| ||||||||| || ||||| ||| |||||| || ||||| || | |||| |
Sbjct 157951 ATGAGACAATATTTAGACTTAATTGAGCG-GGTTTTGAAGGAAGGAGT-GCAAAAGAAAG 157894
Query 99526 ACCGTACTGGCACTGGTACGTTGTCTCTGTTTGGGCATCAAATGCGTTTTAATTTGGCTG 99585
|||||||||| || || || | | || || || |||||||| || ||| | | |
Sbjct 157893 ACCGTACTGGGACCGGAACAGTAAGCGTTTTCGGACACCAAATGCGATTCAATCTTTCCG 157834
Query 99586 AAGGTTTTCCTCTGGTCACTACTAAGCGCTGTCACCTCCGTTCTATTATTCATGAACTCC 99645
| || ||||| || | || || || ||| || || || || | ||||| |
Sbjct 157833 ACGGCTTTCCGTTGCTGACGACCAAAAAACTTCATCTTAAGTCCATCATCTACGAACTTC 157774
Query 99646 TTTGGTTCCTGAAAGGGGATACCAATACCCAGTACCTGAAAGATAACGGCGTCACTATCT 99705
|||||||| | | || |||||||| ||| || || |||| ||||| |||||
Sbjct 157773 TTTGGTTCATTCAGGGAAATACCAATGCCCGGTGGCTCCAAGAGCGAGGCGTTCGTATCT 157714
Query 99706 GGAATGAGTGGG-AAAACGAGAACGGTGACTTAGGACCGGTATACGGAAAGCAGTGGCGG 99764
||||||| |||| | || | |||| || || || || || ||||| || ||||||||
Sbjct 157713 GGAATGAATGGGCAGGACCCG-ACGGCGAATTGGGCCCCGTTTACGGCAAACAGTGGCGT 157655
Query 99765 TCTTGGC 99771
| ||||
Sbjct 157654 GCGTGGC 157648
>seq3076
Length=17365
Score = 89.7 bits (98), Expect = 8e-13
Identities = 176/258 (68%), Gaps = 2/258 (1%)
Strand=Plus/Minus
Query 99519 AAAGGCGACCGTACTGGCACTGGTACGTTGTCTCTGTTTGGGCATCAAATGCGTTTTAAT 99578
||||| ||| | || || || ||||||||||| |||| || |||| ||| | ||||
Sbjct 17192 AAAGGGGACAGGACAGGAACAGGTACGTTGTCCGTGTTCGGCAATCAGATGAGATTTAGC 17133
Query 99579 TTGGCTGAAGGTTTTCCTCTGGTCACTACTAAG-CGCTGTCACCTCCGTTCTATTATTCA 99637
|||| || |||||||| ||| | || |||||| ||| ||| ||| || || ||| |
Sbjct 17132 TTGGAGGATGGTTTTCCGCTGCTTACCACTAAGAAGCT-TCATCTCAAGTCAATCATTTA 17074
Query 99638 TGAACTCCTTTGGTTCCTGAAAGGGGATACCAATACCCAGTACCTGAAAGATAACGGCGT 99697
|| | || |||||| ||| ||| || || || | ||| | | || || ||
Sbjct 17073 CGAGTTGCTGTGGTTCTTGAGAGGCGACACGAACGCTAAGTGGTTACAGGAGCGTGGAGT 17014
Query 99698 CACTATCTGGAATGAGTGGGAAAACGAGAACGGTGACTTAGGACCGGTATACGGAAAGCA 99757
||| ||||| ||||||| | ||| ||||| || | |||| | || || | ||
Sbjct 17013 GCGTATATGGAACGAGTGGGCTGATGAGGACGGTAACCTTGGACATATCTATGGTTACCA 16954
Query 99758 GTGGCGGTCTTGGCCCGA 99775
|||||| || ||||| ||
Sbjct 16953 GTGGCGCTCGTGGCCGGA 16936
>seq758
Length=33601
Score = 86.0 bits (94), Expect = 9e-12
Identities = 65/77 (84%), Gaps = 0/77 (0%)
Strand=Plus/Minus
Query 100167 CTGTCCTGTCAACTCTACCAACGTAGCGCGGACGTGTTCTTAGGTGTGCCGTTCAATATC 100226
|| ||||| || |||||||| || ||||| ||||||||| | ||||| ||||||||||||
Sbjct 8676 CTCTCCTGCCAGCTCTACCAGCGCAGCGCAGACGTGTTCCTGGGTGTTCCGTTCAATATC 8617
Query 100227 GCGTCGTACGCTCTGCT 100243
||||| ||||| || ||
Sbjct 8616 GCGTCCTACGCGCTTCT 8600
>seq4380
Length=47567
Score = 84.2 bits (92), Expect = 3e-11
Identities = 169/251 (67%), Gaps = 0/251 (0%)
Strand=Plus/Plus
Query 99525 GACCGTACTGGCACTGGTACGTTGTCTCTGTTTGGGCATCAAATGCGTTTTAATTTGGCT 99584
|| ||||| || || ||||| |||| |||| || |||| |||||||| ||| | |
Sbjct 21534 GATCGTACCGGAACAGGTACACTGTCGGTGTTCGGCAATCAGATGCGTTTCAATCTCGAA 21593
Query 99585 GAAGGTTTTCCTCTGGTCACTACTAAGCGCTGTCACCTCCGTTCTATTATTCATGAACTC 99644
|| || || || || | || || ||| |||||| || |||||| |||||||
Sbjct 21594 GACGGATTCCCGATGCTGACAACCAAGAAACTCCACCTCAAATCCATTATTTATGAACTG 21653
Query 99645 CTTTGGTTCCTGAAAGGGGATACCAATACCCAGTACCTGAAAGATAACGGCGTCACTATC 99704
||||||||||| ||||| || ||||| | ||||| | || | || || |||
Sbjct 21654 CTTTGGTTCCTCAAAGGCGACACCAACGTGAAATACCTTCAGGACCATGGAGTACGTATA 21713
Query 99705 TGGAATGAGTGGGAAAACGAGAACGGTGACTTAGGACCGGTATACGGAAAGCAGTGGCGG 99764
||||| ||||||| || | || | | |||| | ||||| | ||||||||
Sbjct 21714 TGGAACGAGTGGGCTGACCCCGATGGAGGACTCGGACATATCTACGGCTATCAGTGGCGC 21773
Query 99765 TCTTGGCCCGA 99775
|||||||||
Sbjct 21774 AGTTGGCCCGA 21784
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 734228399134440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |