Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alces_20americanus_20[genbank_20GCA_5F900089705.1_202017-06-20] 5,099 sequences; 74,234,735 total letters Query= NC_031043.1 Length=229501 Score E Sequences producing significant alignments: (Bits) Value seq2619 196 7e-45 seq15 147 3e-30 seq140 104 3e-17 seq4988 91.5 2e-13 seq3076 89.7 8e-13 seq758 86.0 9e-12 seq4380 84.2 3e-11 >seq2619 Length=11042 Score = 196 bits (216), Expect = 7e-45 Identities = 225/303 (74%), Gaps = 0/303 (0%) Strand=Plus/Minus Query 99468 ATGAAACAATATTTGGAATTAATGAGTAAGGTTTTAAATGAAGGCGTTGTTAAAGGCGAC 99527 ||||| || ||||| |||||||||| || |||| ||||||| | ||| | || Sbjct 2942 ATGAAGCAGTATTTAGAATTAATGAAAAAAATTTTGGATGAAGGTGCGCAGAAAAGTGAT 2883 Query 99528 CGTACTGGCACTGGTACGTTGTCTCTGTTTGGGCATCAAATGCGTTTTAATTTGGCTGAA 99587 |||||||| || |||||| ||||| | ||||| ||||| ||| | |||||| | |||||| Sbjct 2882 CGTACTGGTACGGGTACGCTGTCTTTATTTGGACATCAGATGAGATTTAATCTTGCTGAA 2823 Query 99588 GGTTTTCCTCTGGTCACTACTAAGCGCTGTCACCTCCGTTCTATTATTCATGAACTCCTT 99647 ||||||||||| || || || ||| ||||| || || || ||| ||||||| ||| Sbjct 2822 GGTTTTCCTCTAGTGACAACCAAGAAGTGTCATCTTAAATCAATAATTTATGAACTGCTT 2763 Query 99648 TGGTTCCTGAAAGGGGATACCAATACCCAGTACCTGAAAGATAACGGCGTCACTATCTGG 99707 ||||| || || || |||||||| | | || | |||||| |||| |||| ||||||| Sbjct 2762 TGGTTTCTTAACGGTGATACCAACATAAAATATTTAAAAGATCACGGAGTCAGTATCTGG 2703 Query 99708 AATGAGTGGGAAAACGAGAACGGTGACTTAGGACCGGTATACGGAAAGCAGTGGCGGTCT 99767 ||||||||| | || || ||||| | || ||| ||||||| | |||||| | || Sbjct 2702 GATGAGTGGGCTGATGAAAATGGTGAACTGGGGCCGATATACGGTCACCAGTGGAGATCC 2643 Query 99768 TGG 99770 ||| Sbjct 2642 TGG 2640 >seq15 Length=61086 Score = 147 bits (162), Expect = 3e-30 Identities = 198/273 (73%), Gaps = 2/273 (1%) Strand=Plus/Minus Query 99504 AATGAAGGCGTTGTTAAAGGCGACCGTACTGGCACTGGTACGTTGTCTCTGTTTGGGCAT 99563 ||||||||| | | || |||||||| ||||||||||||||| | ||||||| ||| Sbjct 34144 AATGAAGGCATAGAGAAGGGCGACCGCACTGGCACTGGTACGAAAAGTGTGTTTGGTCAT 34085 Query 99564 CAAATGCGTTTTAATTTGGCTGAAGGTTTTCCTCTGGTCACTAC-TAAGCGCTGTCACCT 99622 || ||||| ||| | ||||||| |||||||| ||| | ||||| || ||| || || Sbjct 34084 CAGATGCGCTTTCGTATGGCTGATGGTTTTCCACTGCTTACTACGAAAAAACTG-CATCT 34026 Query 99623 CCGTTCTATTATTCATGAACTCCTTTGGTTCCTGAAAGGGGATACCAATACCCAGTACCT 99682 || || || |||||||| || ||||| || | || |||||||||| || || || Sbjct 34025 GAAGTCAATAATACATGAACTGCTGTGGTTTCTAAGTGGTGATACCAATATCCGCTATCT 33966 Query 99683 GAAAGATAACGGCGTCACTATCTGGAATGAGTGGGAAAACGAGAACGGTGACTTAGGACC 99742 |||| || || || ||| ||||| || |||| | || ||||| || | || || Sbjct 33965 TCAAGAGAATGGTGTGCGTATATGGAACGAATGGGCTGATGAAAACGGAGAACTCGGCCC 33906 Query 99743 GGTATACGGAAAGCAGTGGCGGTCTTGGCCCGA 99775 ||||| || | |||||||| |||||||| || Sbjct 33905 TGTATATGGTCATCAGTGGCGTTCTTGGCCTGA 33873 >seq140 Length=204551 Score = 104 bits (114), Expect = 3e-17 Identities = 203/298 (68%), Gaps = 4/298 (1%) Strand=Plus/Minus Query 99468 ATGAAACAATATTTGGAATTAATGAGTAAGGTTTTAAATGAA--GGCGTTGTTAAAGGCG 99525 ||| ||||||||||||| ||| ||| ||| | ||| || ||||||| |||| | Sbjct 131069 ATGCAACAATATTTGGATTTATTGA--AAGATATTATGGAAAACGGCGTTGATAAAATGG 131012 Query 99526 ACCGTACTGGCACTGGTACGTTGTCTCTGTTTGGGCATCAAATGCGTTTTAATTTGGCTG 99585 | ||||| || ||| ||| || | || || | || ||||| ||| |||| Sbjct 131011 ATCGTACGGGAGTTGGCACGCGCTCGGTTTTCGGTCGGCAGATGCGCTTTGATTTAAGCA 130952 Query 99586 AAGGTTTTCCTCTGGTCACTACTAAGCGCTGTCACCTCCGTTCTATTATTCATGAACTCC 99645 |||||||||| || || || ||||| || || |||||| ||||||| Sbjct 130951 AAGGTTTTCCGCTTGTAACGACTAAAAAAGTGCATCTTAAAAGCATTATTTATGAACTTT 130892 Query 99646 TTTGGTTCCTGAAAGGGGATACCAATACCCAGTACCTGAAAGATAACGGCGTCACTATCT 99705 | ||||| ||||||| ||||| ||| | || ||| | || |||| |||| || | Sbjct 130891 TGTGGTTTTTGAAAGGCGATACAAATGTTAAATATCTGCAGGAACACGGTGTCAGAATTT 130832 Query 99706 GGAATGAGTGGGAAAACGAGAACGGTGACTTAGGACCGGTATACGGAAAGCAGTGGCG 99763 |||||||||||| | | || ||||| || | ||||| || ||||| ||||||||| Sbjct 130831 GGAATGAGTGGGCAGATGAAAACGGCGAACTCGGACCTGTTTACGGTTCGCAGTGGCG 130774 >seq4988 Length=203393 Score = 91.5 bits (100), Expect = 2e-13 Identities = 209/307 (68%), Gaps = 6/307 (2%) Strand=Plus/Minus Query 99468 ATGAAACAATATTTGGAATTAAT-GAGTAAGGTTTTAAATGAAGGCGTTGTTAAAGGC-G 99525 |||| ||||||||| || ||||| ||| |||||| || ||||| || | |||| | Sbjct 157951 ATGAGACAATATTTAGACTTAATTGAGCG-GGTTTTGAAGGAAGGAGT-GCAAAAGAAAG 157894 Query 99526 ACCGTACTGGCACTGGTACGTTGTCTCTGTTTGGGCATCAAATGCGTTTTAATTTGGCTG 99585 |||||||||| || || || | | || || || |||||||| || ||| | | | Sbjct 157893 ACCGTACTGGGACCGGAACAGTAAGCGTTTTCGGACACCAAATGCGATTCAATCTTTCCG 157834 Query 99586 AAGGTTTTCCTCTGGTCACTACTAAGCGCTGTCACCTCCGTTCTATTATTCATGAACTCC 99645 | || ||||| || | || || || ||| || || || || | ||||| | Sbjct 157833 ACGGCTTTCCGTTGCTGACGACCAAAAAACTTCATCTTAAGTCCATCATCTACGAACTTC 157774 Query 99646 TTTGGTTCCTGAAAGGGGATACCAATACCCAGTACCTGAAAGATAACGGCGTCACTATCT 99705 |||||||| | | || |||||||| ||| || || |||| ||||| ||||| Sbjct 157773 TTTGGTTCATTCAGGGAAATACCAATGCCCGGTGGCTCCAAGAGCGAGGCGTTCGTATCT 157714 Query 99706 GGAATGAGTGGG-AAAACGAGAACGGTGACTTAGGACCGGTATACGGAAAGCAGTGGCGG 99764 ||||||| |||| | || | |||| || || || || || ||||| || |||||||| Sbjct 157713 GGAATGAATGGGCAGGACCCG-ACGGCGAATTGGGCCCCGTTTACGGCAAACAGTGGCGT 157655 Query 99765 TCTTGGC 99771 | |||| Sbjct 157654 GCGTGGC 157648 >seq3076 Length=17365 Score = 89.7 bits (98), Expect = 8e-13 Identities = 176/258 (68%), Gaps = 2/258 (1%) Strand=Plus/Minus Query 99519 AAAGGCGACCGTACTGGCACTGGTACGTTGTCTCTGTTTGGGCATCAAATGCGTTTTAAT 99578 ||||| ||| | || || || ||||||||||| |||| || |||| ||| | |||| Sbjct 17192 AAAGGGGACAGGACAGGAACAGGTACGTTGTCCGTGTTCGGCAATCAGATGAGATTTAGC 17133 Query 99579 TTGGCTGAAGGTTTTCCTCTGGTCACTACTAAG-CGCTGTCACCTCCGTTCTATTATTCA 99637 |||| || |||||||| ||| | || |||||| ||| ||| ||| || || ||| | Sbjct 17132 TTGGAGGATGGTTTTCCGCTGCTTACCACTAAGAAGCT-TCATCTCAAGTCAATCATTTA 17074 Query 99638 TGAACTCCTTTGGTTCCTGAAAGGGGATACCAATACCCAGTACCTGAAAGATAACGGCGT 99697 || | || |||||| ||| ||| || || || | ||| | | || || || Sbjct 17073 CGAGTTGCTGTGGTTCTTGAGAGGCGACACGAACGCTAAGTGGTTACAGGAGCGTGGAGT 17014 Query 99698 CACTATCTGGAATGAGTGGGAAAACGAGAACGGTGACTTAGGACCGGTATACGGAAAGCA 99757 ||| ||||| ||||||| | ||| ||||| || | |||| | || || | || Sbjct 17013 GCGTATATGGAACGAGTGGGCTGATGAGGACGGTAACCTTGGACATATCTATGGTTACCA 16954 Query 99758 GTGGCGGTCTTGGCCCGA 99775 |||||| || ||||| || Sbjct 16953 GTGGCGCTCGTGGCCGGA 16936 >seq758 Length=33601 Score = 86.0 bits (94), Expect = 9e-12 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 100167 CTGTCCTGTCAACTCTACCAACGTAGCGCGGACGTGTTCTTAGGTGTGCCGTTCAATATC 100226 || ||||| || |||||||| || ||||| ||||||||| | ||||| |||||||||||| Sbjct 8676 CTCTCCTGCCAGCTCTACCAGCGCAGCGCAGACGTGTTCCTGGGTGTTCCGTTCAATATC 8617 Query 100227 GCGTCGTACGCTCTGCT 100243 ||||| ||||| || || Sbjct 8616 GCGTCCTACGCGCTTCT 8600 >seq4380 Length=47567 Score = 84.2 bits (92), Expect = 3e-11 Identities = 169/251 (67%), Gaps = 0/251 (0%) Strand=Plus/Plus Query 99525 GACCGTACTGGCACTGGTACGTTGTCTCTGTTTGGGCATCAAATGCGTTTTAATTTGGCT 99584 || ||||| || || ||||| |||| |||| || |||| |||||||| ||| | | Sbjct 21534 GATCGTACCGGAACAGGTACACTGTCGGTGTTCGGCAATCAGATGCGTTTCAATCTCGAA 21593 Query 99585 GAAGGTTTTCCTCTGGTCACTACTAAGCGCTGTCACCTCCGTTCTATTATTCATGAACTC 99644 || || || || || | || || ||| |||||| || |||||| ||||||| Sbjct 21594 GACGGATTCCCGATGCTGACAACCAAGAAACTCCACCTCAAATCCATTATTTATGAACTG 21653 Query 99645 CTTTGGTTCCTGAAAGGGGATACCAATACCCAGTACCTGAAAGATAACGGCGTCACTATC 99704 ||||||||||| ||||| || ||||| | ||||| | || | || || ||| Sbjct 21654 CTTTGGTTCCTCAAAGGCGACACCAACGTGAAATACCTTCAGGACCATGGAGTACGTATA 21713 Query 99705 TGGAATGAGTGGGAAAACGAGAACGGTGACTTAGGACCGGTATACGGAAAGCAGTGGCGG 99764 ||||| ||||||| || | || | | |||| | ||||| | |||||||| Sbjct 21714 TGGAACGAGTGGGCTGACCCCGATGGAGGACTCGGACATATCTACGGCTATCAGTGGCGC 21773 Query 99765 TCTTGGCCCGA 99775 ||||||||| Sbjct 21774 AGTTGGCCCGA 21784 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 734228399134440