Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alces_20americanus_20[genbank_20GCA_5F900089705.1_202017-06-20] 5,099 sequences; 74,234,735 total letters Query= NC_031057.1 Length=180219 Score E Sequences producing significant alignments: (Bits) Value seq2964 131 2e-25 seq2619 84.2 3e-11 seq1618 82.4 9e-11 >seq2964 Length=2227 Score = 131 bits (144), Expect = 2e-25 Identities = 571/884 (65%), Gaps = 42/884 (5%) Strand=Plus/Minus Query 155711 GCCCGTGCATACATTGAGTATCGCCACGATCGCGATATTGCCCGTGAACAGAAAAGCAAA 155770 |||||||| || || ||||| ||||| || | || | |||||| ||||| || Sbjct 1966 GCCCGTGCCTATATCGAGTACCGCCATGAAAGAGACCGTCTGCGTGAAAAGAAAGGCGCT 1907 Query 155771 CTGTTTACGGATATCTCCAGTATGGTGAATCTGTCCAATAAAGAGATCACCAACGAGAAC 155830 ||| ||| ||| | || | ||| ||| ||| ||| | |||||||| Sbjct 1906 CTGAGCCAGGAGATCAAGGGACTGATCGATCAGTCAAATGCAGATCTGCTTAACGAGAAT 1847 Query 155831 GCGAACAAAGAC-GCAAGGGTTTTCCCGACACAGCGCGATCTGTTGGCGGGTATCGTAGC 155889 || ||||| ||| |||||| | |||| ||| ||||| || || | || ||||| || || Sbjct 1846 GCCAACAAGGACAGCAAGGTTATTCC-GACCCAGCGTGACCTTCTTGCAGGTATTGTTGC 1788 Query 155890 GAAACACTTCGCACGTAACCACATTCTACCAAAACACATCGTAGAAGCGCATGATTCTGG 155949 |||| ||| | ||||| || || | | | || ||| ||||| || Sbjct 1787 ACGCCACTATGCAAAACAGCACATGCTTCCTCAGGAAGTTGTGAGAGCCCATGAAAGAGG 1728 Query 155950 TGATATCCATTATCATGATCTGGATTACAGCCCGTTCACGCC-ATACACAAACTGCTGTC 156008 || ||||||| ||| ||||| || || |||||| || || ||| ||| | Sbjct 1727 GGAGATCCATTTTCACGATCTCGACTATTCACCGTTCTTCCCGATGTTCAA-CTGTATGC 1669 Query 156009 TGGTGGATTTGAAAGGTATGCTGGCTAATGGCTTCAAGATGGGTAACGCAGACATCGAAC 156068 || | ||| | || ||||||| || |||||||||||||| || || |||||| Sbjct 1668 TGATCGATGTCGGCGGAATGCTGGAACGCGGTTTCAAGATGGGTAATGCCGAAATCGAAT 1609 Query 156069 CCCCGAAATCAATCGGTGTTGCGACTGCTCTTATGGCACAGATCACCGCACAGATTGCTT 156128 | || || |||||| || || || || ||| |||||||||| ||| ||| |||| Sbjct 1608 CACCTAAGTCAATCAGTACCGCAACCGCGGTTACCGCACAGATCATCGCCCAGGTTGCCA 1549 Query 156129 CTCACCAGTACGGCGGGACAACCTTTGCAAACG-TG-GATAAAGTGCTGGCTCCGTATGC 156186 || |||||||| |||||| | ||| || || ||| | ||||| || ||||||| Sbjct 1548 GCCATATCTACGGCGGTACAACCAT--CAACCGCTGTGATGAGGTGCTTGCCCCGTATGT 1491 Query 156187 AGAAATGACAT--ATGAAAAGCATGTTAAGGATGCTAAAAAGTATAAAATTTCGTTAGAT 156244 | || | ||| ||| || ||| || | ||| | ||| | ||| Sbjct 1490 TACCAAGAGTTTCATG--AAGTATCAGAAGATGGCCGAGGAGTGGCACATTCC---TGAT 1436 Query 156245 -CGTACA--TATGCGATGGAAAAGACTGAAAAAGATGTG-TTTGATGCTTTCCAATCGTA 156300 || ||| | ||| | |||||||| || ||| | ||| || ||||| || Sbjct 1435 CCGGACAGCTTTGCCCGAGCCCGTACTGAAAAGGA-GTGCTATGACGCCTTCCAGTCTCT 1377 Query 156301 TGAATACGAAGTTAACACGCTGCATACTGCCAACGGACAAACACCTTTCGTTACTATTAC 156360 |||||| ||||| ||||| |||||||| ||||||| || || || ||||| ||| | Sbjct 1376 TGAATATGAAGTAAACACCCTGCATACCTCCAACGGTCAGACTCCGTTCGTAACTCTCGG 1317 Query 156361 TTTCGGTACTGGTAC-----GGGAATGTTTGAACGAATGATCCAGAAAGCGATTCTGAAA 156415 ||||||| || || |||| | ||| |||||||||| | |||||||| Sbjct 1316 TTTCGGTCTGGGAACATCCTGGGAGT-----CACGTCTGATCCAGAAGTCTATTCTGAAG 1262 Query 156416 AACCGTATTCGTGGTCTGG---GTAAACAAGGTATTACCCCTGTGTTCCCTAAACTGGTC 156472 ||| | ||| |||||| | | || || | || | || |||||||| |||| Sbjct 1261 AACAGAATTGCTGGTCTCGGCCGCAATCA---CAGAACTGCGGTTTTCCCTAAGCTGG-- 1207 Query 156473 ATGTTT---ATGGAAAAAGGTGTAAACATGAATCCTGGGGATCGTAACTATGACATCAAA 156529 ||||| || | | || | ||| || || |||| |||||| || ||||| Sbjct 1206 -TGTTTGCCATCAAGGAGGGACTGAACCGTAAAGAGGGTGATCCTAACTACGATATCAAG 1148 Query 156530 CAATTGGCTCTGGAATGCGCTTCGAAACGTATGTACCCAGATAT 156573 | ||||||| |||||||| || || | ||||| || ||||| Sbjct 1147 AAGCTGGCTCTTGAATGCGCCTCCAAGAGAATGTATCCGGATAT 1104 >seq2619 Length=11042 Score = 84.2 bits (92), Expect = 3e-11 Identities = 173/254 (68%), Gaps = 4/254 (2%) Strand=Plus/Minus Query 42310 GGATCATCGTTTCCGCATGGAACCCTGTTGATCTGGATAAAATGGCATTGCGTCCGTGTC 42369 ||||||||||||| || ||||| | | || | ||||| |||||||| ||| |||| Sbjct 2563 GGATCATCGTTTCAGCCTGGAATGCCGGAGAAATTGATAAGATGGCATTAGCTCCTTGTC 2504 Query 42370 ACTGTTTCTTCCAGTTCGTCGTAATCAACGGTAAACTGTCTCTACAGTGGTATCAGCGTT 42429 | | | |||||||| ||| | || ||| | ||| |||| ||||||||| Sbjct 2503 ATGCTCTTTTCCAGTTTTATGTAGTTAATAACAAATTATCTTGCCAGTTGTATCAGCGAA 2444 Query 42430 CGGTTGATGTC-TTCTTAGGGTTGCCGTTCAATATCGCCTCCTACGCTCTCCTGACGCAT 42488 ||||||| ||||| | ||| || |||||||| || || ||||| || || ||| Sbjct 2443 GCTGTGATGTCTTTCTTGGTGTT-CCTTTCAATATTGCTAGTTATGCTCTTCTTACTCAT 2385 Query 42489 ATTATCGCTGATATTTGCGGGTACGAAGTAGGTGATCTGGTTTGGACAGGTGGTGATGTC 42548 || || || | |||| || || |||||| | |||||||| || || ||||| Sbjct 2384 ATGATGGCGCAGCAGTGCGATCTTGATGTTGGTGATTTTGTTTGGACCGGCGGAGATGTT 2325 Query 42549 CA--TATCTACAAA 42560 || ||| | |||| Sbjct 2324 CACTTATATTCAAA 2311 >seq1618 Length=17866 Score = 82.4 bits (90), Expect = 9e-11 Identities = 114/160 (71%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 42316 TCGTTTCCGCATGGAACCCTGTTGATCTGGATAAAATGGCATTGCGTCCGTGTCACTGTT 42375 |||| | ||||||||||||| ||| | || | |||||||||| ||| ||||| || Sbjct 9388 TCGTCACAGCATGGAACCCTGCTGAGATAGAAGATATGGCATTGCCTCCCTGTCATTGCC 9329 Query 42376 TCTTCCAGTTCGTCGTAATCAACGGTAAACTGTCTCTACAGTGGTATCAGCGTTCGGTTG 42435 |||| |||||| || | | | |||| || || ||| || || ||||||| || Sbjct 9328 TCTTTCAGTTCAATGTGAGCGAAGGTAGTCTTTCCTGTCAGCTATACCAACGTTCGGCTG 9269 Query 42436 ATGTCTTCTTAGGGTTGCCGTTCAATATCGCCTCCTACGC 42475 || | || || || ||||||||||||| ||| ||||| Sbjct 9268 ATATTTTTTTGGGAGTGCCGTTCAATATAGCCAGTTACGC 9229 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 576536050691160