Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alces_20americanus_20[genbank_20GCA_5F900089705.1_202017-06-20] 5,099 sequences; 74,234,735 total letters Query= NC_031080.1 Length=160985 Score E Sequences producing significant alignments: (Bits) Value seq4937 98.7 1e-15 seq1731 96.9 4e-15 seq3314 93.3 4e-14 seq3148 93.3 4e-14 seq3952 91.5 2e-13 seq157 91.5 2e-13 seq1312 89.7 5e-13 seq4669 87.8 2e-12 seq4300 86.0 6e-12 seq4079 84.2 2e-11 seq112 84.2 2e-11 seq4303 82.4 8e-11 seq121 82.4 8e-11 seq32 82.4 8e-11 >seq4937 Length=6770 Score = 98.7 bits (108), Expect = 1e-15 Identities = 68/76 (89%), Gaps = 1/76 (1%) Strand=Plus/Minus Query 95715 CGGGGTGTAGTTCAGTTTGGAAGAGCGCTTGGTTTGGGACCAAGATGTCGCAGGTTCGAA 95774 |||| ||||| ||| | || || |||||||||||||||||||||||||||||||||||| Sbjct 156 CGGGATGTAGCGCAGCT-GGTAGCGCGCTTGGTTTGGGACCAAGATGTCGCAGGTTCGAA 98 Query 95775 TCCTGTCACCCCGACT 95790 |||||||| ||||||| Sbjct 97 TCCTGTCATCCCGACT 82 >seq1731 Length=76336 Score = 96.9 bits (106), Expect = 4e-15 Identities = 70/80 (88%), Gaps = 1/80 (1%) Strand=Plus/Plus Query 95715 CGGGGTGTAGTTCAGTTTGGA-AGAGCGCTTGGTTTGGGACCAAGATGTCGCAGGTTCGA 95773 |||||||| | ||||||||| ||||| | ||||||||||||| | ||||||||||||| Sbjct 59001 CGGGGTGTGGCTCAGTTTGGCTAGAGCACCTGGTTTGGGACCAGGGGGTCGCAGGTTCGA 59060 Query 95774 ATCCTGTCACCCCGACTCAG 95793 ||||||||||||||||| || Sbjct 59061 ATCCTGTCACCCCGACTTAG 59080 >seq3314 Length=12619 Score = 93.3 bits (102), Expect = 4e-14 Identities = 71/84 (85%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 95714 ACGGGGTGTAGTTCAGTTTGGAAGAGCGCTTGGTTTGGGACCAAGATGTCGCAGGTTCGA 95773 ||||||||||| ||| || || || | ||||||||||||| | |||||||||||||| Sbjct 12497 ACGGGGTGTAGCGCAGCCCGGTAGCGCACCTGGTTTGGGACCAGGGTGTCGCAGGTTCGA 12556 Query 95774 ATCCTGTCACCCCGACTCAGCGAC 95797 |||||||||||||||| ||| ||| Sbjct 12557 ATCCTGTCACCCCGACGCAGAGAC 12580 >seq3148 Length=25767 Score = 93.3 bits (102), Expect = 4e-14 Identities = 109/145 (75%), Gaps = 2/145 (1%) Strand=Plus/Plus Query 120467 GGGCCGGGCCGTGGATCCGCCGGAGGCTCGCTGGTCACCTAC-GTCATGGGCATCACCTC 120525 || || |||||||| || | ||| || |||| ||||| ||| ||||||||||| Sbjct 8019 GGCCCCGGCCGTGGTAGTGCGGCAGGTTCAGTGGTGGCCTACTGTC-TGGGCATCACCAA 8077 Query 120526 GATCGATCCGATCAAGTACGACCTGATGTTCGAGCGCTTCATCAACCCGGATCGCCCCGA 120585 |||||| ||| | ||||||||||| |||||||||| ||| ||||||| || ||| | Sbjct 8078 GATCGACCCGCTGAAGTACGACCTCCTGTTCGAGCGTTTCCTCAACCCCGACCGCATCTC 8137 Query 120586 CTTTCCCGACATCGACGTCGACTTC 120610 | ||||| |||||| ||||||| Sbjct 8138 GCTGCCCGATATCGACACCGACTTC 8162 Score = 87.8 bits (96), Expect = 2e-12 Identities = 115/156 (74%), Gaps = 4/156 (3%) Strand=Plus/Plus Query 121524 ACACCTACGGCATCTTGGTCTACCAGGAACAGCTGATCC-GCAC-CGCCAAGGAGCTGGC 121581 ||||||| |||||| ||||| ||||| ||| |||| | || | ||| | || |||| Sbjct 8977 ACACCTATGGCATCACCGTCTATCAGGAGCAGGTGATGCTGCTCTCGCGAC--AGTTGGC 9034 Query 121582 CGGGTTCACTCCGGGCGAGGCCGAGCGTCTGCGCAAGGGCATCGGCAAGAAGAAGATGGA 121641 | ||||| | |||||| ||| || ||||||| ||| || ||||||||||| || Sbjct 9035 CAACTTCACCCGTGGCGAGAGCGACGCCCTTCGCAAGGCCATGGGTAAGAAGAAGATTGA 9094 Query 121642 GATCATCAACGAGCTGGAGCCCAAGTTCCTCGACGG 121677 |||| |||||| || |||| |||||| |||| || Sbjct 9095 GATCGTCAACGCCATGAAGCCTAAGTTCATCGAGGG 9130 >seq3952 Length=6226 Score = 91.5 bits (100), Expect = 2e-13 Identities = 66/75 (88%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 95715 CGGGGTGTAGTTCAGTTTGGA-AGAGCGCTTGGTTTGGGACCAAGATGTCGCAGGTTCGA 95773 |||||||| | ||||||||| ||||| | ||||||||||||| | ||||||||||||| Sbjct 1004 CGGGGTGTGGCTCAGTTTGGCTAGAGCACCTGGTTTGGGACCAGGGGGTCGCAGGTTCGA 945 Query 95774 ATCCTGTCACCCCGA 95788 ||||||||||||||| Sbjct 944 ATCCTGTCACCCCGA 930 >seq157 Length=24126 Score = 91.5 bits (100), Expect = 2e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 95715 CGGGGTGTAGTTCAGTTTGGAAGAGCGCTTGGTTTGGGACCAAGATGTCGCAGGTTCGAA 95774 ||||| |||| |||| ||| |||||||||||||||||||||||||||||| ||||||| Sbjct 8202 CGGGGCGTAGCTCAGCCTGGTAGAGCGCTTGGTTTGGGACCAAGATGTCGCGTGTTCGAA 8143 Query 95775 TCCTGTCACCCCGAC 95789 || ||| ||||||| Sbjct 8142 TCTCGTCGCCCCGAC 8128 >seq1312 Length=3891 Score = 89.7 bits (98), Expect = 5e-13 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 120467 GGGCCGGGCCGTGGATCCGCCGGAGGCTCGCTGGTCACCTACGTCATGGGCATCACCTCG 120526 || || |||||||| || || | |||||| || | ||| | |||||||||| | Sbjct 3108 GGACCTGGCCGTGGGTCGGCAGCAGGCTCCACAGTGGCATACTGCCTGGGCATCACGATG 3167 Query 120527 ATCGATCCGATCAAGTACGACCTGATGTTCGAGCGCTTCATCAACCCGGATCGCCCCGAC 120586 | || || |||||||||||||| |||||||||| ||| |||||||||| || | | Sbjct 3168 GTGGACCCCATCAAGTACGACCTCCTGTTCGAGCGATTCCTCAACCCGGACCGTATCTCC 3227 Query 120587 TTTCCCGACATCGACGTCGACTTC 120610 | || || |||||||| |||||| Sbjct 3228 CTCCCGGATATCGACGTGGACTTC 3251 >seq4669 Length=35002 Score = 87.8 bits (96), Expect = 2e-12 Identities = 100/132 (76%), Gaps = 7/132 (5%) Strand=Plus/Plus Query 121513 CAGCTCGATGAACACCTACGGCATCTTGGTCTACCAGGAACAGCTGATCCGC---ACCGC 121569 || ||| |||| |||||||||||| ||||||||||| ||| | || | | | | Sbjct 8059 CACCTCTCTGAA-ACCTACGGCATCACCGTCTACCAGGAGCAGGTCATGCTCCTGAGCCG 8117 Query 121570 CAAGGAGCTGGCCGGGTTCACTCCGGGCGAGGCCGAGCGTCTGCGCAAGGGCATCGGCAA 121629 |||| || ||||| ||||| | ||||||||||| || || ||||||| ||| ||||| Sbjct 8118 CAAG---CTCGCCGGCTTCACCCGCGGCGAGGCCGACCGCCTCCGCAAGGCCATGGGCAA 8174 Query 121630 GAAGAAGATGGA 121641 ||||||||| || Sbjct 8175 GAAGAAGATAGA 8186 >seq4300 Length=42233 Score = 86.0 bits (94), Expect = 6e-12 Identities = 113/156 (72%), Gaps = 2/156 (1%) Strand=Plus/Minus Query 120467 GGGCCGGGCCGTGGATCCGCCGGAGGCTCGCTGGTCACCTACGTCATGGGCATCACCTCG 120526 |||||||| || ||| ||||| ||| |||||| |||| | || |||||||| Sbjct 9880 GGGCCGGGGCGCGGAAGCGCCGCGGGCAGCGTGGTCAGCTACTGCCTGCGCATCACCAAC 9821 Query 120527 ATCGATCCGATCAAGTACGACCTGATGTTCGAGCGCTTCATCAACCCGGATCGCCCCGAC 120586 | || || || |||||||| |||||||||||||| | || ||||| ||| | | Sbjct 9820 CTGGACCCCATACGCTACGACCTCCTGTTCGAGCGCTTCCTGAATCCGGAGCGCATCAGC 9761 Query 120587 TTTCCCGACATCGACGTCGACTTCCAGAAGTCGAAG 120622 | |||||||||||||| |||||| || | ||||| Sbjct 9760 ATGCCCGACATCGACGTGGACTTC--GACGACGAAG 9727 >seq4079 Length=28942 Score = 84.2 bits (92), Expect = 2e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 120467 GGGCCGGGCCGTGGATCCGCCGGAGGCTCGCTGGTCACCTACGTCATGGGCATCACCTCG 120526 ||||| |||||||| || || | || |||| ||||| | |||||||||| | Sbjct 12186 GGGCCAGGCCGTGGCTCGGCAGCCGGTAGTGTGGTGGCCTACTGCCTGGGCATCACGAAG 12127 Query 120527 ATCGATCCGATCAAGTACGACCTGATGTTCGAGCGCTTCATCAACCCGGATCGCCCCGAC 120586 ||||| ||| | |||||||||||| |||||||||| ||| | ||||| || || | | Sbjct 12126 ATCGACCCGCTGAAGTACGACCTGCTGTTCGAGCGTTTCCTGAACCCCGACCGTATCTCC 12067 Query 120587 TTTCCCGACATCGACGTCGACTTC 120610 | ||||| ||||| ||||||| Sbjct 12066 CTGCCCGATATCGATACCGACTTC 12043 >seq112 Length=216842 Score = 84.2 bits (92), Expect = 2e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 120467 GGGCCGGGCCGTGGATCCGCCGGAGGCTCGCTGGTCACCTACGTCATGGGCATCACCTCG 120526 || || || || || || || | || ||| |||| |||| | | |||||||| | Sbjct 52088 GGACCCGGACGAGGCTCGGCAGCCGGTTCGGTGGTGGCCTATTGCCTCGGCATCACACAG 52029 Query 120527 ATCGATCCGATCAAGTACGACCTGATGTTCGAGCGCTTCATCAACCCGGATCGCCCCGAC 120586 || || ||| |||||||||||||| |||||||||| ||| |||| || || ||| | | Sbjct 52028 ATAGACCCGCTCAAGTACGACCTGCTGTTCGAGCGGTTCCTCAATCCCGACCGCATCTCC 51969 Query 120587 TTTCCCGACATCGACGTCGACTTC 120610 | ||||| |||||| ||||||| Sbjct 51968 CTGCCCGATATCGACACCGACTTC 51945 >seq4303 Length=40773 Score = 82.4 bits (90), Expect = 8e-11 Identities = 65/78 (83%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 100840 CGATGCGAAGGTAGCTCAGCTGGTAGAGCGCCACCTTGCCAAGGTGGAGGTCGCGGGATC 100899 ||| ||| | |||||||| ||||||||||| ||||||||||||| ||||||||||| | Sbjct 6893 CGACGCGGAAATAGCTCAGTTGGTAGAGCGCGACCTTGCCAAGGTCGAGGTCGCGGGTCC 6952 Query 100900 GTAACCCGTTCTTCGCTC 100917 | | |||||| | ||||| Sbjct 6953 GAATCCCGTTTTCCGCTC 6970 >seq121 Length=94419 Score = 82.4 bits (90), Expect = 8e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 95715 CGGGGTGTAGTTCAGTTTGGAAGAGCGCTTGGTTTGGGACCAAGATGTCGCAGGTTCGAA 95774 |||||||||| |||| || || || | ||||||||||||| | |||||||||||||| Sbjct 445 CGGGGTGTAGCGCAGTCCGGTAGCGCTCCTGGTTTGGGACCAGGCGGTCGCAGGTTCGAA 386 Query 95775 TCCTGTCACCCCGAC 95789 ||||||| ||||||| Sbjct 385 TCCTGTCGCCCCGAC 371 >seq32 Length=28727 Score = 82.4 bits (90), Expect = 8e-11 Identities = 64/75 (85%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 95715 CGGGGTGTAGTTCAGTTTGGAAGAGCGCTTGGTTTGGGACCAAGATGTCGCAGGTTCGAA 95774 |||||||||| ||||| || || | | ||||||||||||| | |||||||||||||| Sbjct 4523 CGGGGTGTAGCGCAGTT-GGTAGCGTTCCTGGTTTGGGACCAGGCTGTCGCAGGTTCGAG 4465 Query 95775 TCCTGTCACCCCGAC 95789 ||||||||||||||| Sbjct 4464 TCCTGTCACCCCGAC 4450 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 514991173657800