Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alces_20americanus_20[genbank_20GCA_5F900089705.1_202017-06-20] 5,099 sequences; 74,234,735 total letters Query= NC_031103.1 Length=165772 Score E Sequences producing significant alignments: (Bits) Value seq2964 120 3e-22 seq2701 93.3 4e-14 >seq2964 Length=2227 Score = 120 bits (132), Expect = 3e-22 Identities = 617/960 (64%), Gaps = 38/960 (4%) Strand=Plus/Plus Query 41690 GCGATGCGAGGAAGATTCAGTGTTACAACACCAAGATTATTACGTCCATCAAGAATTTCA 41749 ||||| ||||| |||||||| |||| ||||| ||||| ||||| || || | || | | Sbjct 951 GCGATACGAGGCAGATTCAGACTTACCACACCCAGATTGTTACGGCCGTCGTGGATCTGA 1010 Query 41750 TTACCAGTCGAATCTTTCCATACGCT-CAAGAAACTA-CGGCAACCCATTGGAGAAACAG 41807 ||| || || | |||||| | || || | ||||| ||||| |||| | Sbjct 1011 ACACCGTTC---TCCT--CATACGGGGCGAGGAATGAGCGGCAGCCCATCGGAGT--CTT 1063 Query 41808 GAACAGATGAACCAGTGATAGCTTTAT----TGTTCTTAGCTGAAATAATATCAGGATAC 41863 ||| |||||| || | ||| | || || ||| | | | ||||| |||||| Sbjct 1064 GAA----TGAACCGGTAAC--CTTCACAACCTGATCGTAGTTCAGA--ATATCCGGATAC 1115 Query 41864 ATCCTTTTGCTTGCACACTCTAGAGCAAGCTGTTTAATATCATAGTTCGGATCGTCTTTA 41923 || || ||| || || || ||||| |||| || ||||| ||||| ||||| | | Sbjct 1116 ATTCTCTTGGAGGCGCATTCAAGAGCCAGCTTCTTGATATCGTAGTTAGGATCACCCTCT 1175 Query 41924 TAAAGATTAACACCTTCTTCAACGAACATAACAAGCTTAGGGAAAATAGGAGTTATCCCA 41983 | | | || | || || | | | | || ||||||||||||| | |||| | | Sbjct 1176 TTACGGTTCAGTCCCTCCTTGATGGCAAACACCAGCTTAGGGAAAACCGCAGTTCTGTGA 1235 Query 41984 TCACGACCGAGACCTTTAATACGATTTTTCAGAATTGCTTTCTGAATCATTCGTTCAGTC 42043 | || |||||||| ||| | || |||||||| | ||||| |||| ||| | Sbjct 1236 TTGCGGCCGAGACCAGCAATTCTGTTCTTCAGAATAGACTTCTGGATCAGACGTGACTCC 1295 Query 42044 CAGTCAGTTCCTGTACCAAATGTAATTGTTACAAAAGGTGTTTGTCCGTTTGAACTAAAG 42103 ||| ||||| ||| || | ||||| || || || || ||||| || || Sbjct 1296 CAGGATGTTCCCAGACCGAAACCGAGAGTTACGAACGGAGTCTGACCGTTGGAGGTATGC 1355 Query 42104 AGAGTATTTACTTCATATTCATAAGCTTGGAATGCATCGTATACGTCTTTTTCTGTTTTA 42163 || || ||||||||||||||| || ||||| || || || || ||||| || Sbjct 1356 AGGGTGTTTACTTCATATTCAAGAGACTGGAAGGCGTCATAGCACTCCTTTTCAGTACGG 1415 Query 42164 GATTGAGCATAATTCAACGCATCAGCGATTTGCCATTTTTCTG-CATCCTC-AATATGTT 42221 | | | ||| | | || ||||| || ||||| | || | |||| || ||| | Sbjct 1416 GCTCGGGCAAAGCTGTCCGGATCAGGAATGTGCCACTCCTCGGCCATCTTCTGATACTTC 1475 Query 42222 TTGCATAGGTGCGTTTAACATAAGGAGAAAGTACTTTATCTACATTCG-CAAAAGTCGTT 42280 || | | | ||||||| || | ||| || | ||| ||| | | || || Sbjct 1476 ATGAAACTCTTGG--TAACATACGGGGCAAGCACCTCATC-ACAGCGGTTGATGGTTGTA 1532 Query 42281 CCGCCGTATTGATGGGAAGCAACCTGTGCAGTAATTTGTGCCATAATTGCAGTAGCAACA 42340 |||||||| |||| |||||||| || | || ||||| ||| || || || | Sbjct 1533 CCGCCGTAGATATGGCTGGCAACCTGGGCGATGATCTGTGCGGTAACCGCGGTTGCGGTA 1592 Query 42341 CCGATTGATTTAGGAGTTTCAATCTGTGCATTACCAAGCTTAAATCCATTCTCAAGCATT 42400 | |||||| ||||| | ||| || | |||||||| | ||| || || || |||||| Sbjct 1593 CTGATTGACTTAGGTGATTCGATTTCGGCATTACCCATCTTGAAACCGCGTTCCAGCATT 1652 Query 42401 CCTTTTAAATCTACTAAACA-ACAATTAGTAAAT--GGAAGAGCAGGGGAATAATCAATA 42457 || | ||| | | | || ||| || | | || |||||| | || ||||| || | | Sbjct 1653 CCGCCGACATCGA-TCAGCATACAGTT-GAACATCGGGAAGAAC-GGTGAATAGTCGAGA 1709 Query 42458 TCATGGAAATGAATAATTCCGCTTTCATGCGCTTTCATAA-TAAAAGACGGGACCAT--- 42513 || || ||||| || || |||||||| ||| ||| || | || || | ||| Sbjct 1710 TCGTGAAAATGGATCTCCCCTCTTTCATGGGCTCTCACAACTTCCTGA-GGAAGCATGTG 1768 Query 42514 ATTTTTGGCAATGTGCTTAGACACAATACCAGCCATAAGGTCCCGTTGAGTTGGAAAAAC 42573 | ||| ||| ||| | |||||||| || | |||||| || || || |||| ||| Sbjct 1769 CTGTTTTGCATAGTGGCGTGCAACAATACCTGCAAGAAGGTCACGCTGGGTCGGAATAAC 1828 Query 42574 ACGAGAATCTTTATTAGCATTCTCGTTTAAAAGGTCTTTATTAGTTTTATGAATCAATCC 42633 || || || ||||||||||| | || ||| ||| | | || |||| ||| Sbjct 1829 CTTGCTGTCCTTGTTGGCATTCTCGTTAAGCAGATCTGCATTTGACTGATCGATCAGTCC 1888 >seq2701 Length=6067 Score = 93.3 bits (102), Expect = 4e-14 Identities = 131/184 (71%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 60306 ATTACAGACTCTCAGTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAG 60365 ||||||| ||| ||| || || | | | ||| || |||||||||| || | || Sbjct 5367 ATTACAGCTTCTGAGTGAAAGTTCTTGTTACAACATCCTGCTGCTGTTCTTTGGTTAAAG 5308 Query 60366 AGTTAAAGCGAACTGCATAACCGGATACGCGGATGGTCAGCTGCGGATATTTTTCCGGAT 60425 |||| || || || |||||||| || || ||||| ||||| ||||||||||| || | Sbjct 5307 AGTTGAAACGTACAGCATAACCTGAAACACGGATTGTCAGTGTAGGATATTTTTCAGGGT 5248 Query 60426 GCTTAACTGCATCTTCCAGAGTTTCACGACGCAGAACGTTAACGTTCAGGTGTTGACCAC 60485 | | | |||||| ||| ||||| | |||||||| || ||||| || ||||| | Sbjct 5247 GTTCCATTGCATCGAGCAGTGTTTCTCTGTTGAGAACGTTCACATTCAGATGCTGACCGC 5188 Query 60486 CTTC 60489 |||| Sbjct 5187 CTTC 5184 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 530308597301280