Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alces_20americanus_20[genbank_20GCA_5F900089705.1_202017-06-20] 5,099 sequences; 74,234,735 total letters Query= NC_031126.1 Length=244840 Score E Sequences producing significant alignments: (Bits) Value seq4688 109 9e-19 seq758 104 4e-17 seq3773 95.1 2e-14 seq3339 89.7 8e-13 seq2619 86.0 1e-11 seq2324 86.0 1e-11 seq1145 84.2 3e-11 >seq4688 Length=13253 Score = 109 bits (120), Expect = 9e-19 Identities = 179/257 (70%), Gaps = 2/257 (1%) Strand=Plus/Plus Query 200036 AAAATATGAACCAGTATCTCATCCTCCTAAATCAAGTCCGTCGCGACGGGCAT-GTAAAG 200094 || ||||||| ||||| ||| |||||| | || |||| || | |||| || ||| Sbjct 3340 AAGATATGAAACAGTACCTCGACCTCCTGAGACACATCCG-CGAGCACGGCACCGTCAAG 3398 Query 200095 AAAGACCGTACCGGTANNNNNACCACGTCTATTTTCGGTGCACAGATGCGCTTCAATCTA 200154 | ||||| ||||| ||| | | ||||| |||||||| ||| | || Sbjct 3399 CAGGACCGCACCGGCGTAGGCACCCAGAGCGTATTCGGCTACCAGATGCGATTCGACCTG 3458 Query 200155 CAAGACGGCTTCCCATTGGTGACGACCAAGAAGTGCCATCTCCGTTCCATCATTCACGAG 200214 || || || ||||| | | || ||||| ||| ||| ||||| |||||||| |||||| Sbjct 3459 CAGGAAGGTTTCCCCCTCCTCACCACCAAAAAGGTCCACCTCCGCTCCATCATCCACGAG 3518 Query 200215 CTGTTGTGGTTCCTTAACGGTGACACCAATATCAAGTATCTGAACGATAACAATGTCACC 200274 || | |||||| | ||| |||||||| ||| || || ||| ||||| ||| || Sbjct 3519 CTTCTCTGGTTCATAGCCGGCGACACCAACATCTCCTACCTCCACGCCAACAAGGTCTCC 3578 Query 200275 ATTTGGGACGAATGGGC 200291 || |||||||||||||| Sbjct 3579 ATCTGGGACGAATGGGC 3595 >seq758 Length=33601 Score = 104 bits (114), Expect = 4e-17 Identities = 116/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 200137 CAGATGCGCTTCAATCTACAAGACGGCTTCCCATTGGTGACGACCAAGAAGTGCCATCTC 200196 |||||||||||| |||| | |||||||| | | || ||||||||| || ||| Sbjct 9054 CAGATGCGCTTCGATCTTGCCCAGGGCTTCCCTCTCCTTACCACCAAGAAGGTGCACCTC 8995 Query 200197 CGTTCCATCATTCACGAGCTGTTGTGGTTCCTTAACGGTGACACCAATATCAAGTATCTG 200256 ||||||||| ||||||| ||||||||||| ||| |||||||| ||||||||||| Sbjct 8994 AAGTCCATCATTTACGAGCTCCTGTGGTTCCTTTCCGGAGACACCAACATCAAGTATCTT 8935 Query 200257 AACGATAACAATGTCACCATTTGGGACGAATGGGC 200291 || || || || | || |||||||| ||||| Sbjct 8934 AAGGACCACGGCGTTTCAATATGGGACGAGTGGGC 8900 >seq3773 Length=40482 Score = 95.1 bits (104), Expect = 2e-14 Identities = 114/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 200137 CAGATGCGCTTCAATCTACAAGACGGCTTCCCATTGGTGACGACCAAGAAGTGCCATCTC 200196 ||||||||||||| | || || |||||||| || ||||||| || ||| || || Sbjct 38577 CAGATGCGCTTCAGCTTGCAGGAAGGCTTCCCCCTGCTGACGACGAAAAAGCTGCACCTG 38636 Query 200197 CGTTCCATCATTCACGAGCTGTTGTGGTTCCTTAACGGTGACACCAATATCAAGTATCTG 200256 || ||||||||| ||| || | |||||||| || ||||| || || ||||| ||| Sbjct 38637 CGCAGCATCATTCATGAGTTGCTCTGGTTCCTGCGGGGCGACACAAACATTAAGTACCTG 38696 Query 200257 AACGATAACAATGTCACCATTTGGGACGAATGGGC 200291 | || ||| || ||||| |||||||| ||||| Sbjct 38697 CATGACAACCGCGTAACCATCTGGGACGAGTGGGC 38731 >seq3339 Length=9595 Score = 89.7 bits (98), Expect = 8e-13 Identities = 109/149 (73%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 200143 CGCTTCAATCTACAAGACGGCTTCCCATTGGTGACGACCAAGAAGTGCCATCTCCGTTCC 200202 |||| ||| || ||||| || ||||| || |||| |||||||| |||||| ||| Sbjct 2105 CGCTACAACCTGCAAGATGGATTCCCGCTGCTGACCACCAAGAAACTCCATCTGAAGTCC 2164 Query 200203 ATCATTCACGAGCTGTTGTGGTTCCTTAACGGTGACACCAATATCAAGTATCTGAACGAT 200262 ||||| |||| |||||||||||||| || || |||||||| | | || ||| | || Sbjct 2165 ATCATATACGAACTGTTGTGGTTCCTGAAAGGCGACACCAACGTGCATTACCTGCAGGAA 2224 Query 200263 AACAATGTCACCATTTGGGACGAATGGGC 200291 | |||| || ||| |||||||||| Sbjct 2225 CATGGGGTCAGAATCTGGAACGAATGGGC 2253 >seq2619 Length=11042 Score = 86.0 bits (94), Expect = 1e-11 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 200137 CAGATGCGCTTCAATCTACAAGACGGCTTCCCATTGGTGACGACCAAGAAGTGCCATCTC 200196 |||||| | || ||||| || || || || | ||||| ||||||||||| ||||| Sbjct 2846 CAGATGAGATTTAATCTTGCTGAAGGTTTTCCTCTAGTGACAACCAAGAAGTGTCATCTT 2787 Query 200197 CGTTCCATCATTCACGAGCTGTTGTGGTTCCTTAACGGTGACACCAATATCAAGTATCTG 200256 || || ||| | || ||| | ||||| ||||||||||| ||||| || || ||| | Sbjct 2786 AAATCAATAATTTATGAACTGCTTTGGTTTCTTAACGGTGATACCAACATAAAATATTTA 2727 Query 200257 AACGATAACAATGTCACCATTTGGGACGAATGGGC 200291 || ||| || |||| || ||||| || ||||| Sbjct 2726 AAAGATCACGGAGTCAGTATCTGGGATGAGTGGGC 2692 >seq2324 Length=83463 Score = 86.0 bits (94), Expect = 1e-11 Identities = 115/159 (72%), Gaps = 1/159 (1%) Strand=Plus/Minus Query 200143 CGCTTCAATCTACAAGACGGCTTCCCATTGGTGACGACCAAGAAGTGCCATCTCCGTTCC 200202 |||| | | || || || || ||||| ||||||| ||||||||| || | Sbjct 68705 CGCTACGACCTGCAGGAAGGTTTCCCCCTGGTGACCACCAAGAAGGTGTTCCTGAAGGGC 68646 Query 200203 ATCATTCACGAGCTGTTGTGGTTCCTTAACGGTGACACCAATATCAAGTATCTGAACGAT 200262 ||||| |||||| || |||||||| | ||| || ||||| |||| ||||||| ||| Sbjct 68645 ATCATCCACGAGTTGCTGTGGTTCATATCCGGCGATACCAACATCAGGTATCTGCTCGAC 68586 Query 200263 AACAATGTCACCATTTGGGACGAATGGGCGCGAGACGAA 200301 ||||| || ||| |||||||||||||| ||| |||| Sbjct 68585 AACAACGTGCACATCTGGGACGAATGGGC-CGACGCGAA 68548 >seq1145 Length=6550 Score = 84.2 bits (92), Expect = 3e-11 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 200137 CAGATGCGCTTCAATCTACAAGACGGCTTCCCATTGGTGACGACCAAGAAGTGCCATCTC 200196 |||||||| |||||||| | ||||| ||||| || | || || |||||| |||||| Sbjct 2704 CAGATGCGGTTCAATCTGGAGGACGGATTCCCGCTGCTCACCACGAAGAAGCTCCATCTG 2763 Query 200197 CGTTCCATCATTCACGAGCTGTTGTGGTTCCTTAACGGTGACACCAATATCAAGTATCTG 200256 |||||||| | || |||||||||||||| || || || ||||| | || || || Sbjct 2764 AAATCCATCATATATGAACTGTTGTGGTTCCTGAAGGGCGATACCAACGTGAAATACCTC 2823 Query 200257 AACGATAACAATGTCACCATTTGGGACGAATGGGCG 200292 | || | ||| ||| ||| | ||||||||| Sbjct 2824 CAGGAGCATGGTGTGCGCATCTGGAATGAATGGGCG 2859 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 783310070592000