Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alces_20americanus_20[genbank_20GCA_5F900089705.1_202017-06-20] 5,099 sequences; 74,234,735 total letters Query= NC_031235.1 Length=194437 Score E Sequences producing significant alignments: (Bits) Value seq4320 100 4e-16 seq2369 86.0 8e-12 seq4050 84.2 3e-11 seq2216 84.2 3e-11 >seq4320 Length=16669 Score = 100 bits (110), Expect = 4e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 19648 CGGGGAATTAGCTCAGTTGGTAGAGCACCTGCTTTGCAAGCAGGCTGTCAGGAGTTCGAG 19707 ||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 16282 CGGGGGTATAGCTCAGTTGGTAGAGCACCTGCTTTGCAAGCAGGGGGTCAGGAGTTCGAG 16223 Query 19708 TCTCCTATTCTCC 19720 |||||| ||||| Sbjct 16222 TCTCCTTATCTCC 16210 >seq2369 Length=11493 Score = 86.0 bits (94), Expect = 8e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 19649 GGGGAATTAGCTCAGTTGGTAGAGCACCTGCTTTGCAAGCAGGCTGTCAGGAGTTCGAGT 19708 |||| |||||||||| ||||||||| ||||| | ||| ||||| ||||||||||||| | Sbjct 11332 GGGGTATTAGCTCAGCTGGTAGAGCGCCTGCATGGCATGCAGGAGGTCAGGAGTTCGAAT 11391 Query 19709 CTCCTATTCTCC 19720 ||||||| |||| Sbjct 11392 CTCCTATGCTCC 11403 >seq4050 Length=57342 Score = 84.2 bits (92), Expect = 3e-11 Identities = 57/64 (89%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 165779 AGGGTCAGTAGCTCAGTTGGATAGAGCAACTGCCTTCTAAGCAGTCGGTCACAGGTTCGA 165838 ||| || |||||||||||||||||||||||||||||||||||||| || | | ||||||| Sbjct 43936 AGGTTCCGTAGCTCAGTTGGATAGAGCAACTGCCTTCTAAGCAGTAGGCCTCGGGTTCGA 43995 Query 165839 GTCC 165842 | || Sbjct 43996 GCCC 43999 >seq2216 Length=5131 Score = 84.2 bits (92), Expect = 3e-11 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 165787 TAGCTCAGTTGGATAGAGCAACTGCCTTCTAAGCAGTCGGTCACAGGTTCGAGTCC 165842 ||||||||||||||||||||||||||||||||||||| || | |||||||||||| Sbjct 4445 TAGCTCAGTTGGATAGAGCAACTGCCTTCTAAGCAGTAGGCCGGAGGTTCGAGTCC 4500 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622030750787880