Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alces_20americanus_20[genbank_20GCA_5F900089705.1_202017-06-20] 5,099 sequences; 74,234,735 total letters Query= NC_031242.1 Length=174307 Score E Sequences producing significant alignments: (Bits) Value seq4320 107 2e-18 seq2369 89.7 6e-13 seq2216 84.2 2e-11 seq4050 82.4 9e-11 seq3952 82.4 9e-11 >seq4320 Length=16669 Score = 107 bits (118), Expect = 2e-18 Identities = 70/77 (91%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 18245 GCCAGGGGGATTAGCTCAGTTGGTAGAGCACCTGCTTTGCAAGCAGGCTGTCAGGAGTTC 18304 ||| ||||| |||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 16285 GCCCGGGGGTATAGCTCAGTTGGTAGAGCACCTGCTTTGCAAGCAGGGGGTCAGGAGTTC 16226 Query 18305 GAGTCTCCTATTCTCCA 18321 ||||||||| |||||| Sbjct 16225 GAGTCTCCTTATCTCCA 16209 >seq2369 Length=11493 Score = 89.7 bits (98), Expect = 6e-13 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 18248 AGGGGGATTAGCTCAGTTGGTAGAGCACCTGCTTTGCAAGCAGGCTGTCAGGAGTTCGAG 18307 ||||| |||||||||| ||||||||| ||||| | ||| ||||| ||||||||||||| Sbjct 11331 AGGGGTATTAGCTCAGCTGGTAGAGCGCCTGCATGGCATGCAGGAGGTCAGGAGTTCGAA 11390 Query 18308 TCTCCTATTCTCCA 18321 |||||||| ||||| Sbjct 11391 TCTCCTATGCTCCA 11404 >seq2216 Length=5131 Score = 84.2 bits (92), Expect = 2e-11 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 159830 TAGCTCAGTTGGATAGAGCAACTGCCTTCTAAGCAGTCGGTCACAGGTTCGAGTCC 159885 ||||||||||||||||||||||||||||||||||||| || | |||||||||||| Sbjct 4445 TAGCTCAGTTGGATAGAGCAACTGCCTTCTAAGCAGTAGGCCGGAGGTTCGAGTCC 4500 >seq4050 Length=57342 Score = 82.4 bits (90), Expect = 9e-11 Identities = 56/63 (89%), Gaps = 0/63 (0%) Strand=Plus/Plus Query 159823 GGGTCAGTAGCTCAGTTGGATAGAGCAACTGCCTTCTAAGCAGTCGGTCACAGGTTCGAG 159882 || || |||||||||||||||||||||||||||||||||||||| || | | |||||||| Sbjct 43937 GGTTCCGTAGCTCAGTTGGATAGAGCAACTGCCTTCTAAGCAGTAGGCCTCGGGTTCGAG 43996 Query 159883 TCC 159885 || Sbjct 43997 CCC 43999 >seq3952 Length=6226 Score = 82.4 bits (90), Expect = 9e-11 Identities = 69/85 (81%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 159807 TTACTACCTCCTCTATGGGTCAGTAGCTCAGTTGGATAGAGCAACTGCCTTCTAAGCAGT 159866 ||| |||||| ||| ||||||||||||| ||||||||||||| ||||||||||| || Sbjct 771 TTAATACCTCTGACATGTGTCAGTAGCTCAGCTGGATAGAGCAACGGCCTTCTAAGCCGT 712 Query 159867 CGGTCACAGGTTCGAGTCCTGTCTG 159891 |||| ||||||| ||| |||| Sbjct 711 GGGTCGGGGGTTCGAATCCCTTCTG 687 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557618856502680