Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alces_20americanus_20[genbank_20GCA_5F900089705.1_202017-06-20] 5,099 sequences; 74,234,735 total letters Query= NC_031935.1 Length=186386 Score E Sequences producing significant alignments: (Bits) Value seq3952 89.7 6e-13 seq4575 87.8 2e-12 seq1595 84.2 3e-11 seq4987 82.4 9e-11 seq4374 82.4 9e-11 seq2580 82.4 9e-11 seq1731 82.4 9e-11 seq842 82.4 9e-11 >seq3952 Length=6226 Score = 89.7 bits (98), Expect = 6e-13 Identities = 58/64 (91%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 157419 TGTCTCAGTAGCTCAGCTGGATAGAGCAACTGCCTTCTAAGCAGTCGGTCGCTGGTTCGA 157478 ||| |||||||||||||||||||||||||| ||||||||||| || ||||| ||||||| Sbjct 756 TGTGTCAGTAGCTCAGCTGGATAGAGCAACGGCCTTCTAAGCCGTGGGTCGGGGGTTCGA 697 Query 157479 ATCC 157482 |||| Sbjct 696 ATCC 693 >seq4575 Length=28649 Score = 87.8 bits (96), Expect = 2e-12 Identities = 71/85 (84%), Gaps = 1/85 (1%) Strand=Plus/Minus Query 18366 TTAGGGTAGGTGTCCGAGTGGTTAATGGAGGCGGACTGTAAATCCGCTGGCTCTGCCTAC 18425 || ||||||||| |||||||| ||| || ||||||||||||||||| || | || |||| Sbjct 5782 TTTGGGTAGGTGCCCGAGTGGCTAAAGGGGGCGGACTGTAAATCCGTTGCATTTG-CTAC 5724 Query 18426 GGGGGTTCAAATCCCTCCCTGCCCA 18450 | ||||| ||||| |||||||||| Sbjct 5723 GATGGTTCGAATCCATCCCTGCCCA 5699 >seq1595 Length=35389 Score = 84.2 bits (92), Expect = 3e-11 Identities = 58/62 (94%), Gaps = 3/62 (5%) Strand=Plus/Plus Query 157426 GTAGCTCAGCTGGATAGAGCAACTGCCTTCTAAGCAGTCGGTCGCTG-GTTCGAATC-CA 157483 |||||||||||||||||||||||||||||||||||||| |||| ||| ||||||||| || Sbjct 28583 GTAGCTCAGCTGGATAGAGCAACTGCCTTCTAAGCAGTAGGTC-CTGCGTTCGAATCGCA 28641 Query 157484 GC 157485 || Sbjct 28642 GC 28643 >seq4987 Length=240000 Score = 82.4 bits (90), Expect = 9e-11 Identities = 54/60 (90%), Gaps = 0/60 (0%) Strand=Plus/Minus Query 157423 TCAGTAGCTCAGCTGGATAGAGCAACTGCCTTCTAAGCAGTCGGTCGCTGGTTCGAATCC 157482 |||||||||||||||||||||||||| ||||||||||| || |||| ||||||||||| Sbjct 27941 TCAGTAGCTCAGCTGGATAGAGCAACAGCCTTCTAAGCTGTGGGTCTTGGGTTCGAATCC 27882 >seq4374 Length=59948 Score = 82.4 bits (90), Expect = 9e-11 Identities = 67/79 (85%), Gaps = 2/79 (3%) Strand=Plus/Minus Query 17859 GGGGAATTAGCTCAGTTGG-TAGAGCGCCTGCTTTGCAAGCAGGATGTCAGCGGTTCGAG 17917 |||| |||||||||| ||| |||||| ||||||||||||||||| ||| |||||||| Sbjct 2401 GGGGGATTAGCTCAGCTGGCTAGAGCACCTGCTTTGCAAGCAGGGGGTCGACGGTTCGAA 2342 Query 17918 TCCGCTATTCTCCA-TTCG 17935 |||| |||||||| |||| Sbjct 2341 TCCGTCATTCTCCACTTCG 2323 >seq2580 Length=1271 Score = 82.4 bits (90), Expect = 9e-11 Identities = 54/60 (90%), Gaps = 0/60 (0%) Strand=Plus/Minus Query 157423 TCAGTAGCTCAGCTGGATAGAGCAACTGCCTTCTAAGCAGTCGGTCGCTGGTTCGAATCC 157482 || ||||||||||||||||||||||| ||||||||||| || |||| | ||||||||||| Sbjct 277 TCCGTAGCTCAGCTGGATAGAGCAACAGCCTTCTAAGCTGTGGGTCTCGGGTTCGAATCC 218 >seq1731 Length=76336 Score = 82.4 bits (90), Expect = 9e-11 Identities = 56/63 (89%), Gaps = 0/63 (0%) Strand=Plus/Plus Query 157420 GTCTCAGTAGCTCAGCTGGATAGAGCAACTGCCTTCTAAGCAGTCGGTCGCTGGTTCGAA 157479 || || ||||||||||||||||||||||| ||||||||||| || ||||| |||||||| Sbjct 59200 GTGTCTGTAGCTCAGCTGGATAGAGCAACGGCCTTCTAAGCCGTGGGTCGGGGGTTCGAA 59259 Query 157480 TCC 157482 ||| Sbjct 59260 TCC 59262 >seq842 Length=6115 Score = 82.4 bits (90), Expect = 9e-11 Identities = 54/60 (90%), Gaps = 0/60 (0%) Strand=Plus/Minus Query 157423 TCAGTAGCTCAGCTGGATAGAGCAACTGCCTTCTAAGCAGTCGGTCGCTGGTTCGAATCC 157482 || ||||||||||||||||||||||| ||||||||||| || |||| | ||||||||||| Sbjct 846 TCCGTAGCTCAGCTGGATAGAGCAACAGCCTTCTAAGCTGTGGGTCTCGGGTTCGAATCC 787 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596269192869840