Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alces_20americanus_20[genbank_20GCA_5F900089705.1_202017-06-20] 5,099 sequences; 74,234,735 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq2800 167 5e-36 seq4832 102 2e-16 seq4815 91.5 3e-13 seq1732 91.5 3e-13 seq4233 86.0 1e-11 >seq2800 Length=3984 Score = 167 bits (184), Expect = 5e-36 Identities = 350/510 (69%), Gaps = 19/510 (4%) Strand=Plus/Plus Query 301407 CTTAAAGATAGCGATGCTTAAAATGGACCCCTATATCAACGTCGATCCGGGGACGATGAG 301466 || |||| || | ||| ||||| |||| || || ||||| || ||||| || || ||||| Sbjct 797 CTCAAAG-TAACTATGATTAAACTGGATCCATACATCAATGTGGATCCTGGTACAATGAG 855 Query 301467 CCCGACTCAACATGGAGAAGTGTTCGTGACGGATGATGGTGCTGAAACCGATCTGGATCT 301526 || | ||| |||||||||||||| || || || || || |||||||| ||| ||||| | Sbjct 856 TCCTATTCAGCATGGAGAAGTGTTTGTAACTGAAGACGGAGCTGAAACTGATTTGGATTT 915 Query 301527 GGGGCACTACGAACGTTTCACTTCATTAACCCTTAAGCGTGAA-AGTAATTTTACGACTG 301585 ||| ||||| |||||||||| ||| | | | | || | ||| ||| || | Sbjct 916 GGGTCACTATGAACGTTTCA-TTCGTACGAAAATGACCAAAAACAACAATCATACAACCG 974 Query 301586 GCCAAGTTTAT--TTAAAAGTTATCGAAAATGAACGCGAAGGTAGCTATCTCGGAAAGAC 301643 | || ||||| || | ||| |||| ||||| | || |||||| ||| || Sbjct 975 GAAAAATTTATTCTTCAGTATTAAGGAAA--GAACGTCACGGAGACTATCTAGGAGCAAC 1032 Query 301644 GGTGCAAGTTGTTCCCCACATCACCGATGAAATCAAAAGAAGAATTCACATTGCGGCTG- 301702 || || ||| |||| ||||| ||| ||||||| || ||| ||| |||| | || Sbjct 1033 TGTTCAGGTTATTCCGCACATTACCAATGAAATAAAGGAAAGCGTTC---TTGCCGGTGG 1089 Query 301703 -AAAAATCA-GATATACTTATTGGAGAAATTGGAGGAACGGTCGGAGATATCGAATCGCT 301760 || ||| ||| | | ||| ||||| || ||||| ||||| ||||| ||||| || Sbjct 1090 TGAAGGTCATGATGTGGCTCTTGTTGAAATCGGTGGAACTGTCGGTGATATTGAATCACT 1149 Query 301761 TCCTTTTATAGAAGCGATTCGTCAACT--CT-CTCATGACGAAGGAACGGCCAATGTTCT 301817 |||||| | ||||| |||||||| | || | || || ||| ||||| | Sbjct 1150 TCCTTTCCTTGAAGCTATTCGTCAGATGGCTGCGGATATCGGCCGAA---ACAATGCAAT 1206 Query 301818 GTTCATTCATCTCGTGCTCTTACCCTATATAGCGACTGCTGGTGAGTTGAAATCAAAGCC 301877 ||||||||| | || | || ||| | |||| ||| ||| | ||| ||||||| Sbjct 1207 CTTCATTCATTTGACTCTTGTTCCATATCTTCAGACTTCTGAAGAGGTTAAAACAAAGCC 1266 Query 301878 AGCACAGCATTCGGTTAAAGAATTGATGTC 301907 |||||||||| || || ||| || |||| Sbjct 1267 TACACAGCATTCTGTAAAGGAACTGCTGTC 1296 >seq4832 Length=43954 Score = 102 bits (112), Expect = 2e-16 Identities = 176/254 (69%), Gaps = 10/254 (4%) Strand=Plus/Plus Query 301432 GACCCCTATATCAACGTCGATCCGGGGACGATGAGCCCGACTCAACATGGAGAAGTGTTC 301491 ||||| ||||| || || || || || ||||||||||| ||| ||||| || || ||| Sbjct 2556 GACCCTTATATGAATGTGGACCCTGGAACGATGAGCCCTTTTCAGCATGGCGAGGTTTTC 2615 Query 301492 GTGACGGATGATGGTGCTGAAACCGATCTGGATCTGGGGCACTACGAACGTTTCACTTCA 301551 || || ||||| || || ||||| ||||| ||||| || |||||||| ||||| | || | Sbjct 2616 GTTACTGATGACGGGGCGGAAACGGATCTTGATCTTGGACACTACGAGCGTTTTA-TTGA 2674 Query 301552 TTAACCCTTAAGCGTGAAAGT-----AATTTTACGACTGGCCAAGTTTATTTAAAAGTTA 301606 | || |||| |||| ||| | |||| || | ||||| | || || Sbjct 2675 TGAAAATTTAA----CTAAGTATTCGAATATGACGAGCGGGCGGGTTTACTGGAATGTCT 2730 Query 301607 TCGAAAATGAACGCGAAGGTAGCTATCTCGGAAAGACGGTGCAAGTTGTTCCCCACATCA 301666 | | || || | | || |||||| ||| |||||||||| || |||| ||||||| Sbjct 2731 TAAATAAGGAGAGAAACGGCGACTATCTTGGAGAGACGGTGCAGATTATTCCGCACATCA 2790 Query 301667 CCGATGAAATCAAA 301680 | | || || ||| Sbjct 2791 CGAACGAGATTAAA 2804 >seq4815 Length=121993 Score = 91.5 bits (100), Expect = 3e-13 Identities = 168/242 (69%), Gaps = 6/242 (2%) Strand=Plus/Minus Query 288084 TTCGATTCTACGATTGCGCTGACAATATCTTGA--GGCACCCCTTCGAAGTTAGCTAGTA 288141 || || |||||||||||| || | || ||| || || ||| | | || || || | Sbjct 84569 TTTGAGTCTACGATTGCG--GATATTAGATTGCTTGGAACATCTTTGTAATTCGCGAGCA 84512 Query 288142 GTTGCTTAGTATCCTTTGGAAAGCAATAAGCTCCGTAACCAAAAGAAGGATTGCAATACC 288201 |||| || ||||| ||||||| || || | ||||| ||||| ||||||||| || Sbjct 84511 GTTGTTTTGTATCTTTTGGAAGACAGTATCCGCCGTATCCAAACGAAGGATTGTTGTAAA 84452 Query 288202 CTTGACCAATACGAGGTTCGAGAGTCACACCATCAATAATTTCCTTTGCGTTCATGTTAT 288261 | |||||||||||| || || ||||||| ||| || | |||| || || | Sbjct 84451 AATCACCAATACGAGGGTCAAGGCAAACACCATGAATTATATTTTTTG-TATCGAGTCCT 84393 Query 288262 GCGACATC-GCGAATGTATCAAGTTCGTTGAAATAAGCAACACGCATTGCCAGATACGTA 288320 | || ||| | || ||||| ||||| |||||||| ||||||| ||| | ||| || Sbjct 84392 CTAATTTCTGCGTAAGTGTCAAGCTCGTTAAAATAAGCGACACGCAATGCTAAATATGTG 84333 Query 288321 TT 288322 || Sbjct 84332 TT 84331 >seq1732 Length=72554 Score = 91.5 bits (100), Expect = 3e-13 Identities = 234/354 (66%), Gaps = 8/354 (2%) Strand=Plus/Minus Query 301432 GACCCCTATATCAACGTCGATCCGGGGACGATGAGCCCGACTCAACATGGAGAAGTGTTC 301491 || || ||||| || || |||||||| || ||||| || ||| |||||||||||||| Sbjct 18004 GATCCATATATGAATGTTGATCCGGGAACAATGAGTCCATATCAGCATGGAGAAGTGTTT 17945 Query 301492 GTGACGGATGATGGTGCTGAAACCGATCTGGATCTGGGGCACTACGAACGTTTCACTTCA 301551 || || |||||||| ||||| || || ||||| || || || || || || |||| | | Sbjct 17944 GTTACAGATGATGGCGCTGAGACTGACCTGGACCTTGGTCATTATGAGCGATTCA-TCGA 17886 Query 301552 T-TAACCCTTAAGCGTGAAAGTAATTTTACGACTGGCCAAGTTTATTTAAAAGTTATCGA 301610 | || || || | |||| |||| | || |||| |||| || || | | Sbjct 17885 TGAAAGTCTCAACAAATACTCTAATCTTACTTCCGGAAAAGTATATTGGAATGTATTAAA 17826 Query 301611 AAATGAACGCGAAGGTAGCTATCTCGGAAAGACGGTGCAAGTTGTTCCCCACATCACCGA 301670 |||| | ||||| ||||| || | || || || ||| |||| || ||||| || Sbjct 17825 TCGTGAAAGAAAAGGTGAGTATCTTGGCCAAACTGTTCAGGTTATTCCTCATATCACAGA 17766 Query 301671 TGAAATCAAAAGAAGAATTCACATTGCGGCTGAAA------AATCAGATATACTTATTGG 301724 || || || | || | || | ||||| | | | ||| |||||||| Sbjct 17765 GGAGATTAAGCGTTTTATATATATGGGTGCTGAGACTTCGGACTGCGATGTACTTATTAC 17706 Query 301725 AGAAATTGGAGGAACGGTCGGAGATATCGAATCGCTTCCTTTTATAGAAGCGAT 301778 ||| || || || || |||||||| ||||||| || ||| | || || || Sbjct 17705 AGAGATAGGTGGCACTACAGGAGATATTGAATCGCAGCCGTTTTTGGAGGCAAT 17652 >seq4233 Length=173878 Score = 86.0 bits (94), Expect = 1e-11 Identities = 190/284 (67%), Gaps = 6/284 (2%) Strand=Plus/Minus Query 43838 GGCCGGATGAAATTTACAACATGGCCGCCCAAAGTTTTGTGGGTGACAGCTTCAACCAGG 43897 |||| || || || || ||| | || || ||||| |||| | | |||| || | Sbjct 70734 GGCCCGACGAGATATATAACCTTGCTGCACAAAGCCATGTGAAGGTCTCCTTCGACGTGC 70675 Query 43898 CTGAAGTGACTGCAAATGTAGATGCTCTTGGTGTTCTGCGTTTGTTAGACGCAGTTCGTA 43957 | || | || || ||| ||||| | || || ||||| |||| || || || || | Sbjct 70674 CGGAGTTTACAGCCGATGCTGATGCAATCGGCGTGCTGCGCCTGTTGGAAGCCGTGCGCA 70615 Query 43958 TAGCAGGTGTGA-----ACTCTC-GGATTTGCCAAGCGTCGACATCGGAGTTGTACGGAA 44011 | ||||| || || | |||||| || || || ||| |||||||||||| Sbjct 70614 TTGCAGGCCTGGCACAGACGTGCAGGATTTATCAGGCATCCACAAGCGAGTTGTACGGAC 70555 Query 44012 AGGTTCAGGAGATTCCTCAAACAGAAAGGACTCCGTTTTATCCCCGGAGTCCATATGGTG 44071 ||| || ||| |||| || | || | || || || || || || || ||||| |||| Sbjct 70554 TGGTGCAAGAGGTTCCGCAGAAGGAGACAACCCCCTTCTACCCGCGTAGCCCATACGGTG 70495 Query 44072 TGGCGAAGCTATATGCCTATTGGATTTGTAAAAATTATCGCGAG 44115 |||| ||||| |||| || |||||| || || ||||||||| Sbjct 70494 TGGCAAAGCTCTATGGCTTCTGGATTATAAAGAACTATCGCGAG 70451 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046670815546746