Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ammotragus_20lervia_20[genbank_20GCA_5F002201775.1_202017-06-20] 77,320 sequences; 2,650,836,958 total letters Query= NC_001348.1 Length=124884 Score E Sequences producing significant alignments: (Bits) Value seq23781 269 2e-67 >seq23781 Length=1882226 Score = 269 bits (298), Expect = 2e-67 Identities = 532/782 (68%), Gaps = 4/782 (1%) Strand=Plus/Plus Query 18579 TTTGGAATGCAAGCTCGATACAATTTGCGAAATGAATTTCCTCTTTTAACTACAAAGCGT 18638 || || ||||| || || ||||| || || ||||||||||||| | || || || ||| Sbjct 24804 TTCGGGATGCAGGCGCGGTACAACCTGAGAGATGAATTTCCTCTGCTGACAACCAAACGT 24863 Query 18639 GTTTTTTGGAGGGCCGTCGTGGAAGAGTTGTTATGGTTTATCCGCGGGTCAACCGATTCC 18698 ||||| |||| | || |||| |||||| | ||||||||| || || ||| | | Sbjct 24864 GTTTTCTGGAAAGGTGTTTTGGAGGAGTTGCTGTGGTTTATCAAGGGATCCACCAACGCT 24923 Query 18699 AAAGAACTCGCCGCTAAAGATATACACATATGGGATATATACGGATCGAGCAAATTTCTA 18758 || ||||| | | || | | | || |||||| |||| || | | || | Sbjct 24924 AAGGAACTGTCTTCCAAGGGAGTGAAAATTTGGGATGCCAACGGGTCCCGAGACTTCTTG 24983 Query 18759 AATAGGAATGGCTTCCATAAAAGACACACGGGGGACCTTGGCCCCATTTACGGCTTCCAG 18818 || | |||||| || ||| ||||| | ||||| |||| ||||||||| Sbjct 24984 GATGGCTTGGGCTTCTCCAATAGAGCTGAAGGGGATTTGGGCCCGGTTTATGGCTTCCAG 25043 Query 18819 TGGAGACATTTTGGAGCGGAATATAAAGACTGTCAATCAAACTATTTACAGCAAGGAATC 18878 ||||| |||||||| || ||||| ||||| | ||| | |||| | |||||| | Sbjct 25044 TGGAGGCATTTTGGGGCTGAATACAAAGATATGGATTCAGATTATTCAGGTCAAGGAGTA 25103 Query 18879 GATCAGCTGCAAACTGTTATAGATACAATTAAAACAAACCCAGAAAGCCGACGAATGATT 18938 ||||| ||||||| || || || ||||| ||||| ||||| | | | || |||| || Sbjct 25104 GATCAACTGCAAAAAGTGATCGACACAATCAAAACCAACCCTAACAACAGAAGAATCATC 25163 Query 18939 ATATCGTCTTGGAATCCAAAGGATATCCCCTTAATGGTACTACCTCCATGTCACACGTTA 18998 | | ||||||||||||| ||| |||| | |||| || || ||||| ||| | | Sbjct 25164 CTGTGTGCTTGGAATCCAAAAGATCTCCCTCTCATGGCCCTCCCCCCATGCCACGCCCTC 25223 Query 18999 TGTCAGTTTTACGTTGCAAACGGTGAATTATCCTGCCAAGTATACCAGAGATCGGGGGAT 19058 || ||||| ||||| | || || || | |||||||| | ||||| || ||||| || Sbjct 25224 TGCCAGTTCTACGTGGTGAATGGGGAGCTGTCCTGCCAGTTGTACCAAAGGTCGGGAGAC 25283 Query 19059 ATGGGCCTTGGGGTACCGTTCAACATTGCTGGATATGCACTTCTTACCTACATAGTAGCG 19118 |||||||| || || || ||||| ||||| | || || || || |||||||| | || Sbjct 25284 ATGGGCCTGGGTGTGCCCTTCAATATTGCCAGCTACGCCCTGCTCACCTACATGATCGCA 25343 Query 19119 CATGTTACAGGACTTAAAACC-GGAGATTTAATTCATACAATGGGGGATGCACATATTTA 19177 || | || |||| | || || || || || | || || |||| |||||||| ||||| Sbjct 25344 CACATCAC-GGACCTGAAGCCAGGTGACTTCGTACACACTCTGGGAGATGCACACATTTA 25402 Query 19178 CTTGAATCATATAGATGCTTTAAAAGTGCAGCTAGCTCGATCCCCAAAACCTTTTCCTTG 19237 | ||||||| || || | | || ||||| ||| |||| ||||| || Sbjct 25403 CCTGAATCACATCGAGCCACTGAAGACTCAGCTTCAGCGAGAACCAAGGCCTTTCCCCAA 25462 Query 19238 CCTTAAAATTATTCGAAATGTAACAGA-TATAAACGACTTTAAATGGGACGATTTTCAGC 19296 || ||||| || |||| || ||| || | ||||| || || || |||||| Sbjct 25463 GCTCAAAATCCTTTGAAAAGT-TGAGACAATCGATGACTTCAAGGCTGAAGACTTTCAGA 25521 Query 19297 TTGATGGATATAATCCACAccccccccTAAAAATGGAAATGGCTCTTTAATGGATTTTTA 19356 |||| || || ||||| ||||| | | ||||||||||||||| | || | ||||| Sbjct 25522 TTGAAGGCTACAATCCTCACCCGACTATTAAAATGGAAATGGCTGTCTAGAGTGCTTTTA 25581 Query 19357 AA 19358 || Sbjct 25582 AA 25583 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399127532399400